Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq10 105 1e-17 seq24 93.3 9e-14 seq9 91.5 3e-13 seq7 91.5 3e-13 seq25 89.7 1e-12 seq5 89.7 1e-12 seq2 89.7 1e-12 seq6 87.8 4e-12 seq21 86.0 1e-11 >seq10 Length=32721116 Score = 105 bits (116), Expect = 1e-17 Identities = 587/927 (63%), Gaps = 23/927 (2%) Strand=Plus/Plus Query 293527 TACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCA 293586 ||||| | ||| ||||||||| | || || ||||| | || | |||||| |||| Sbjct 10503719 TACTGGAGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCT 10503778 Query 293587 TCAGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGG 293646 | | ||||||||| ||||| | || || ||| ||| ||||||||||| | Sbjct 10503779 GCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATG 10503838 Query 293647 TTGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGC 293706 |||||| |||| | | || ||||| | || | ||| ||| | || | Sbjct 10503839 TTGAGCAGCTGAGCTTCGGGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCC 10503898 Query 293707 AGACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGA 293766 |||||||| || || | || | || | | ||||||||| ||||| || || ||| Sbjct 10503899 AGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCAGCTTCAGGA 10503958 Query 293767 ACCGCATATGCCATCACATCAATGCTCCTGTCCAGGTTCTTCGTGAGAACCTTGACATGC 293826 |||| || | | || ||| || ||| ||||| ||| | |||||| || Sbjct 10503959 ACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACAATTACCTTGG--TGA 10504016 Query 293827 TTGCGG--AGGTCCTCAAAGTCAAATGCA---TCATTCTTGACATAGTTCTTGAGCACGA 293881 | || || | || ||||| || | || | |||| || | ||||| ||| Sbjct 10504017 CGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGA 10504076 Query 293882 TGCTACCGATGACACACACTGCAGTCTCCTCCTTCGAGGTGTACTCGACAATCTCAGCAC 293941 || | | | || || || ||| ||||| ||||||||| || | ||| | | Sbjct 10504077 TGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGC 10504136 Query 293942 AGAGGTTACTGCCCTTGATGGTGCCCGCATTAGACTGCATGTTCTTGGCATTGACACTGT 294001 ||||||| |||| ||||||||||||| || ||| || |||| ||| | || Sbjct 10504137 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGT 10504196 Query 294002 CTTTGTTGAGGACATATGGCATACCCGTTTCAATCTGAGTGGTGACCATGGTGTTCCAGA 294061 | |||| ||| | || || | || ||||| |||| | || |||| || ||||| Sbjct 10504197 CCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGA 10504256 Query 294062 CATCGCGAGCCTTCACCACGCGCTTTGCCTTCCCCTCAGACTCATACTTGGTGTAAAGCT 294121 | | ||||||||||| | ||| | |||| || |||||| |||||||| |||| Sbjct 10504257 GCTGCTGCGCCTTCACCACCCTCTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCT 10504316 Query 294122 CTTCGTATTCCTTGCCATATACATCAGACAGGCCAGGGCACTCGTGAGGGTCA-AGTAGA 294180 ||| | |||| || | || ||| ||||| |||||| ||| || | | Sbjct 10504317 TCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCG-CTGGGACACATCAAG 10504375 Query 294181 GACCA---CTGGGCATCAGTCTCCACGCGCTTCATGAATAGATCATTGACCCACATTGCG 294237 ||||| |||| | ||||||| | ||||||||| || ||| || ||||| ||| Sbjct 10504376 GACCAGTCCTGG---TTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCG 10504432 Query 294238 TAAAACAAGTTGCGGGCGCGCAGGCTCTCCTCACCT-TGAT-TACGACGGAGGAGCAGGA 294295 || || | || | ||| | | | ||||| ||| || | | | | || ||||| Sbjct 10504433 TAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTC--AGCTCCAGGA 10504490 Query 294296 AGTCCATGATGTCGGGATGATGGGGTTCCAGATACACAGCAAAGGACCC---CTTCCTGC 294352 |||| | | |||| || || ||||| |||| || |||| ||| || || Sbjct 10504491 AGTCGAACACGTCGAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGT 10504550 Query 294353 GTCCCCCCTGGTTGGCGTAGGCAGATGTGGTGTCAAACACCTTCAGCATAGGCACGATGC 294412 || ||||||| | |||| || ||| ||| | || ||||||| ||||| | | Sbjct 10504551 TGCCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACC 10504610 Query 294413 CATCGGACTCACCATTGGTTCC-GCGA 294438 | | ||| | || ||||| || |||| Sbjct 10504611 CGTTGGAGTTGCCGTTGGTGCCTGCGA 10504637 >seq24 Length=30408201 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 24414122 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 24414063 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 24414062 GCCCCACGTTGGGC 24414049 >seq9 Length=19682451 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 9652066 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 9652125 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 9652126 CCCCACGTTGGGC 9652138 >seq7 Length=23593460 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 18735200 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 18735141 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 18735140 CCCCACGTTGGGC 18735128 >seq25 Length=55650406 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 49833232 AGCCCGGCTAGCTCAGTCGGTAGAGCATAAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 49833173 Query 142563 CCCCACATCGGG 142574 |||||| | ||| Sbjct 49833172 CCCCACGTTGGG 49833161 >seq5 Length=26266306 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 8090859 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 8090800 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 8090799 CCCACGTTGGGC 8090788 >seq2 Length=25629008 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 217836 CTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGC 217895 |||||| || ||||| || |||||||||||||| |||||||| |||| || | Sbjct 3546694 CTGCACGCTGATCCTTACTGAGGGAGACTCAGCCAAGACGCTGGCTGTGTCTGGGCTGGG 3546635 Query 217896 CGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCG 217955 |||||||| || || | || ||| | ||||||||||| || ||| |||||||||| || Sbjct 3546634 AGTGGTGGGACGGGACCGCTACGGTGTGTTCCCCCTCCGGGGAAAGATGCTCAACGTCCG 3546575 Query 217956 CGATGCCTC 217964 || || || Sbjct 3546574 GGAGGCTTC 3546566 >seq6 Length=24035278 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 142048 CGCATGTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 |||| ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||| Sbjct 3792372 CGCA-GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGT 3792314 Query 142107 TCGACCCCCGCCAGAGA 142123 |||| |||| |||||| Sbjct 3792313 TCGAGTCCCGGCAGAGA 3792297 >seq21 Length=29933922 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 25082659 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 25082600 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 25082599 TCCCGGCAGAGA 25082588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836470771025