Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq3 159 6e-34 seq23 154 3e-32 seq7 93.3 8e-14 seq5 87.8 3e-12 >seq3 Length=27041879 Score = 159 bits (176), Expect = 6e-34 Identities = 160/205 (78%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || ||||| ||||| |||||||| || ||||| || || | |||||||| | ||| Sbjct 11044863 GTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTG 11044922 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || ||||| || || ||||| || || ||||| || || || || || || Sbjct 11044923 CTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATTTT 11044982 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGA-TTCTACTTCCAAGGTGATGGTTTTTCCCG 68436 ||||||||| ||| |||||||| |||| ||| || |||| |||||| || || || | Sbjct 11044983 GGCCTTGACGTTCTCAATGGTGTC-GCTGGGTTCCACCTCCAGGGTGATTGTCTTGCCAG 11045041 Query 68437 TGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||| ||||| |||||||| Sbjct 11045042 TGAGGGTCTTTACGAAGATCTGCAT 11045066 Score = 152 bits (168), Expect = 9e-32 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 68255 CAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAA 68314 || ||| || |||||||| || |||||||| || ||||| || || | |||||||| | Sbjct 11046871 CAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAG 11046930 Query 68315 CTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAAT 68374 |||||| ||||| || || || || || ||||| || || ||||| ||||| || || || Sbjct 11046931 CTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT 11046990 Query 68375 CTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCC 68434 ||| ||||| ||| ||| ||||| || | || || |||| |||||||||||| || Sbjct 11046991 CTTGGCCTTAACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCC 11047050 Query 68435 CGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || || || |||||||| Sbjct 11047051 GGTGAGGGTTTTCACAAAGATCTGCAT 11047077 >seq23 Length=24361341 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| | ||||| | |||| ||| || |||||||| || |||| ||| || || || Sbjct 2609153 TCCTCCCCTCAGGCGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGA 2609094 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | |||||||| | ||| || || || || || || || || ||||| || || Sbjct 2609093 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 2609034 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||||||| || || |||||||||||||| ||| ||| ||||| || | || || Sbjct 2609033 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 2608974 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||| || || || |||||||| || ||||| |||||||| Sbjct 2608973 CTCCAGGGTGATAGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 2608926 >seq7 Length=23593460 Score = 93.3 bits (102), Expect = 8e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||||||| | ||||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 3932174 CATGACGCCCATCCTCTGGTACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTC 3932115 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 || |||||| |||||||||||| || |||||||| Sbjct 3932114 CAGAGAAATGTTCTCCATGAAGTCGAACGGGTTCTC 3932079 Score = 93.3 bits (102), Expect = 8e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||||||| | ||||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 3939051 CATGACGCCCATCCTCTGGTACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTC 3939110 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 || |||||| |||||||||||| || |||||||| Sbjct 3939111 CAGAGAAATGTTCTCCATGAAGTCGAACGGGTTCTC 3939146 >seq5 Length=26266306 Score = 87.8 bits (96), Expect = 3e-12 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 84444 GGTGACGAGAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTC 84503 ||||| | ||||||||| |||||||||||| ||||| || ||||||| || |||| Sbjct 8090871 GGTGAAGTCAGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTC 8090812 Query 84504 GTGGGTTCGAGCCCCACATCGGGCAGGTCG 84533 ||||||||||||||||| | |||| ||||| Sbjct 8090811 GTGGGTTCGAGCCCCACGTTGGGC-GGTCG 8090783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622111993000