Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq10 654 0.0 seq7 114 2e-20 seq3 111 3e-19 seq5 96.9 7e-15 >seq10 Length=32721116 Score = 654 bits (724), Expect = 0.0 Identities = 1118/1602 (70%), Gaps = 60/1602 (4%) Strand=Plus/Plus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || |||| |||| |||| | | ||| | |||||||||||||| ||||||| Sbjct 10503428 GATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCC---GCGCTCC 10503484 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || ||| || ||||| ||| || | ||| |||||||| |||||||| | ||| Sbjct 10503485 GTCAGATCCTTGAGGAGGTGAGGGTTGACAATCTGGAACTCTCCGGACAGCACCCTGCGG 10503544 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || || ||||||| ||| |||||||||| ||||| || ||| Sbjct 10503545 GTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 10503604 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || |||||||||| || |||||| ||||||||||||||||| | ||| Sbjct 10503605 GAGGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTT 10503664 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATG 244306 | ||| ||||||||||| | | | |||| || || |||||||| Sbjct 10503665 TCCTTCAGCAGCTTCCAGTCCCAAAGGTC-----GGTCGGCGTCTTCT----CCCACATG 10503715 Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG 244366 || |||| || | |||||||||||||| ||||||||| ||| |||||| ||| | Sbjct 10503716 TCGTACTGGAGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGA-G 10503774 Query 244367 CGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCAT 244425 | ||| ||| |||| ||||| | || |||||||||| ||||||||||||||||||| Sbjct 10503775 CTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTG 10503834 Query 244426 CTTGTTCATGTCGCGGGCCTTGCCGCAGGT--GAAGGGGATGCC-CATCATCATGAAGAC 244482 |||| | | || | ||| | | | | ||| ||| |||| ||||| |||||| | Sbjct 10503835 GATGTTGA-GCAGCTGAGCTT-CGGGACTTTCGAACGGG-TGCCGCATCAGGATGAAGGC 10503891 Query 244483 GTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGC 244542 ||||||||| ||||| |||||||| ||||| || ||||| ||||||||||| | || Sbjct 10503892 GTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCAGC 10503951 Query 244543 TTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCG 244602 ||| || || ||||| ||||| |||||| | |||||||||||| || | Sbjct 10503952 TTCAGGAACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACAATTACCTT 10504011 Query 244603 GACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCT 244662 | |||| ||||||| || |||||| | || || || ||| | | Sbjct 10504012 GGTGACGGAGGCCAGCTTCTTGAAGTCGAA-----AG------TCCGCTCTGGCG----T 10504056 Query 244663 CACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGT 244722 || || ||||||||||| | |||||||||||||||||||||||| ||| | |||| Sbjct 10504057 GACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGT 10504116 Query 244723 GTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATT 244782 ||||| || | ||| ||||||||||| |||||||||||||||||||||| ||| || || Sbjct 10504117 GTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTT 10504176 Query 244783 GGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGC 244842 | ||| |||||| |||||||||||||||||| |||| |||||| ||| ||||| Sbjct 10504177 GCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGA 10504236 Query 244843 GACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGC 244902 ||| || | || |||||| | | ||||| ||| ||| | | || || Sbjct 10504237 CTCGATGATGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTCTTCACTCTCCCTTCCTT 10504296 Query 244903 CTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA 244962 ||| || |||||| || ||||||||| |||||| |||||| || || || || Sbjct 10504297 CTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACA 10504356 Query 244963 CGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGT 245021 | ||| ||| ||||| | ||| || | | || || |||| |||||| |||| Sbjct 10504357 C-TCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGT 10504415 Query 245022 CGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCT 245081 | |||||||| | ||| | ||| ||||| |||| |||||||| ||| || ||||||| Sbjct 10504416 CAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCT 10504475 Query 245082 TCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGG 245141 || ||||||||| ||||| || ||||||| |||||| ||||||| ||| | |||| || Sbjct 10504476 TCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCATGGCTCCAGGTACATGGCGAAGG 10504535 Query 245142 CGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATG 245197 | ||||| | ||||||||| |||||||| | | | |||||| |||| | | Sbjct 10504536 CCCCGGGTCTCTTGTTGCCGCCCTGGTCGA----CGTACCGAGCGGTGTTGTTGTAAACT 10504591 Query 245198 CGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTG 245257 | ||| | ||||| | ||||| |||| |||||||||||| ||||||| ||| | Sbjct 10504592 CTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCCGTC 10504651 Query 245258 CCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAG 245317 | || | ||| | | || ||||| ||||| ||| |||||| ||||| || || Sbjct 10504652 GATCGGATGCAGCTCACCGCCACGCCTATCCCGCCAGCGGACTTGGAAATGAGCGCACAC 10504711 Query 245318 CTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAG 245377 ||| | |||||| ||||| || |||||||| ||||||| |||||| ||||| Sbjct 10504712 TGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAA 10504771 Query 245378 GAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 ||||||||| ||| | | | | | |||||| || || || ||||||||| || Sbjct 10504772 CTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC 10504831 Query 245438 TAGCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCG-CCGTGGA 245495 | | || ||| |||| ||| |||| || ||||||||| | ||| ||||| | Sbjct 10504832 CA-CTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATG-TCTCGCCCGTGAA 10504889 Query 245496 TCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCT----CGGGT 245551 || | | ||||||||| ||||||| || ||| | || | || || Sbjct 10504890 TCCCAACCGACACCCTCATGAGCATGTGCTGCGG----TCGCTCGGCCACTTTCCCGTTG 10504945 Query 245552 CCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 ||| |||| |||||| ||||| || |||||||| || ||| Sbjct 10504946 ATCTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAAG 10504987 >seq7 Length=23593460 Score = 114 bits (126), Expect = 2e-20 Identities = 109/137 (80%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| ||||| |||| || ||||| ||||||||||| || | |||||| Sbjct 3931190 GGAGAGAGAGTGGTGGCCTTCGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCC 3931249 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 ||||||||||||| ||| ||| ||| | ||||||||| || |||||| ||||| || Sbjct 3931250 GCCATCTTCTGGCTGAAGAAGAGAGGCCT-GATGCCCGGTCTGACCTTCAGCAACGAGCT 3931308 Query 42815 CATCAGCAGGGACGAGG 42831 ||||||| | ||||||| Sbjct 3931309 CATCAGCCGAGACGAGG 3931325 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| ||||| ||||| |||| ||| | ||||||||||| ||||||||||||||| Sbjct 3931026 CTGTTCAACGCCATCCAGACGCTGCCGTGCGTGAAGAAGAAGGCCGACTGGGCGCTCAAC 3931085 Query 42669 TGGATCG 42675 ||||||| Sbjct 3931086 TGGATCG 3931092 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| |||||||| ||||||||||| || ||||||| ||||||||||| || |||||||| Sbjct 3932084 CCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAGCG 3932143 Query 43130 CGTCGCCGACTACCAG 43145 |||| || |||||| Sbjct 3932144 GGTCGGGGAGTACCAG 3932159 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| |||||||| ||||||||||| || ||||||| ||||||||||| || |||||||| Sbjct 3939141 CCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAGCG 3939082 Query 43130 CGTCGCCGACTACCAG 43145 |||| || |||||| Sbjct 3939081 GGTCGGGGAGTACCAG 3939066 >seq3 Length=27041879 Score = 111 bits (122), Expect = 3e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||| | |||||||| |||||||| || ||| |||||||||||||||| | || || Sbjct 15255859 GTGTATTCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGG 15255918 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 |||| ||| ||||||||||||||||||||||||| | ||| || ||||| ||| Sbjct 15255919 TTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGC 15255978 Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACC 244879 | ||| || | || |||||| | | |||||| ||| Sbjct 15255979 GACTCGATGATGGCGTACCAGAGCTGCTGAGCCTTCACC 15256017 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||| |||||||| || ||||| | ||| ||| ||||| |||| |||||||| || Sbjct 15256320 CTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTCTCTGCTCTTC 15256379 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 || ||||||||| ||||||||||||| ||||| ||||| | ||||| ||||||| Sbjct 15256380 TTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCATGCCACGGCTCCAG 15256439 Query 245128 GTAGACAGCGAGGGCGCCGGG 245148 ||| |||| || ||| || || Sbjct 15256440 GTACACAGAGAAGGCCCCTGG 15256460 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| || ||||| | ||| ||||| |||||| || | ||| ||| Sbjct 15254222 ACCTGAAACTCTCCTGAGAGCACCCTGCGAGTGTAGATGTTGCTTGTGTATGCCTCAATG 15254281 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||| |||| ||||| || ||| || || ||||| || | || |||||| Sbjct 15254282 GACTCATTGTTACCCAAGATCTGGGCAGTGGAAGCTGTGGGCATTGGGGCCAAAAGCAGA 15254341 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| |||||||| Sbjct 15254342 CTGTTCCTCACACCGTGCCT 15254361 >seq5 Length=26266306 Score = 96.9 bits (106), Expect = 7e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| | || || || ||| | || || ||||| || |||||||| ||| | ||||| Sbjct 12374960 GGGGAGCGTCTTGTGGCTTTTGCAGCAGTGGAGGGGATTTTCTTCTCAGGCTCATTCGCT 12374901 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | |||| |||||| ||| ||| ||| || ||||| || || |||| ||| |||||||| Sbjct 12374900 GCTATCTACTGGCTGAAGAAGAGAGGCCTC-ATGCCAGGTCTTACCTACTCCAACGAACT 12374842 Query 42815 CATCAGCAGGGACGAGG 42831 ||| |||||||| |||| Sbjct 12374841 CATTAGCAGGGATGAGG 12374825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338904894000