Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq10 163 3e-35 seq3 98.7 1e-15 seq7 87.8 2e-12 >seq10 Length=32721116 Score = 163 bits (180), Expect = 3e-35 Identities = 892/1400 (64%), Gaps = 46/1400 (3%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| |||||||||||| Sbjct 10503548 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 10503607 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || ||||||||||| |||| || |||||||| | | || | || | || |||| Sbjct 10503608 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCC 10503667 Query 114062 TTGAGGGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGG 114118 || || | |||||| | || | | |||| | || ||||| || ||||| Sbjct 10503668 TTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGGCGTCTTCTCC---CACATGTCGTACTGG 10503724 Query 114119 AGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCC 114178 ||||| || | | | | ||||| ||||| | |||||||| ||||| | | || Sbjct 10503725 AGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCG 10503784 Query 114179 AATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT 114238 | ||| |||| ||||| ||||| ||||| || || ||||| || || | || | Sbjct 10503785 AGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGC 10503844 Query 114239 GCCTTGGCCTCGTCGGAAT--CAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGAC 114296 || || ||| ||| | | |||| | | || || || || | || || |||| Sbjct 10503845 AGCTGAGCTTCG--GGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGAC 10503902 Query 114297 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGG 114356 | ||||| |||| || || || | || | | | || || | ||| || | Sbjct 10503903 CCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCAGCTTCAGGAACCG 10503962 Query 114357 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 114416 | || | || | ||||| | | | || || ||||| | ||||| |||| Sbjct 10503963 GGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACAATTACCTTGGTGACGGAGG 10504022 Query 114417 GAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTG 114476 ||||| | | | || ||| | || |||| |||| ||| | |||||||| | Sbjct 10504023 CCAGCTTCTTGAAGTCGAAAGTCCG---CTCTGGCGTGACGTACATGTTGAGGGCGATGG 10504079 Query 114477 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACA 114536 | ||||| || || || | ||| ||||| |||||||| | | ||||| || | Sbjct 10504080 AGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAGA 10504139 Query 114537 AATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 114596 || | ||| |||||||||| ||||| || || ||| ||| || || |||| Sbjct 10504140 GGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCT 10504199 Query 114597 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT 114656 |||| |||||||| || ||||| || || || ||||||| || || || | ||||| | Sbjct 10504200 TGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCT 10504259 Query 114657 -CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCT 114715 | ||| || || | || ||| ||| |||| ||| || || |||||||| Sbjct 10504260 GCTGCGCCTTCACCACCCTC-TTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTC 10504318 Query 114716 TCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGAGAGA 114774 || ||||| || ||| | ||| ||||| || || ||||| || | | || Sbjct 10504319 TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCG-CTGGGACACATCAAGGA 10504377 Query 114775 CCATTGACCACCCTCCTCAACACGCT--TCATGAAGAGGTCTGGGATCCAGAGAGCTGAG 114832 ||| | || | ||| ||| || ||||||| ||||| |||||||| | || || Sbjct 10504378 CCAGT--CCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAG 10504435 Query 114833 AAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 114891 || || || | | | ||| || | | || || || || ||||| ||||| Sbjct 10504436 AAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGAAGTC 10504494 Query 114892 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGAC 114947 | | || |||||| || |||||||||| |||| | ||| || | | | Sbjct 10504495 GAACACGTCGAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTG-C 10504553 Query 114948 CAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCAT 115007 | |||||| || |||| || ||| || | || | ||||| || | | || | Sbjct 10504554 CGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGT 10504613 Query 115008 CAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGC--TCTGA--CA--TCATGGA 115061 || | ||| || || || || || ||| | | || || || ||| | Sbjct 10504614 TGGAGTTGCCGTTGGTGCCTGCGATGT-AG-CTTCCCGTCGATCGGATGCAGCTCACCGC 10504671 Query 115062 TGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGT 115121 || || || || || || |||| || || |||| |||| | | || || ||| Sbjct 10504672 ----CACGCCTATCCCGCCAGCGGACTTGGAAATGAGCGCACACTGCTTCAGGGTGTCGT 10504727 Query 115122 AGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCC 115181 |||| || ||||| ||| |||| | |||| |||||||| || |||| || |||| Sbjct 10504728 AGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCC 10504787 Query 115182 TTGGT--GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACA 115238 ||| || || |||||||||||||| || | |||||| ||||| || | | |||| Sbjct 10504788 --GGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACA 10504844 Query 115239 TCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCC 115298 | ||||||||| | | ||||| |||||| ||||||||| || | ||| |||| Sbjct 10504845 GGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGAATCCCAACCGACACCC 10504904 Query 115299 GCATAAACATGTATTGGGGT 115318 ||| | ||||| || ||| Sbjct 10504905 TCATGAGCATGTGCTGCGGT 10504924 >seq3 Length=27041879 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||||| ||||| | ||||||||||||||||||| ||||| ||||| Sbjct 15254255 TAGATGTTGCTTGTGTATGCCTCAATGGACTCATTGTTACCCAAGATCTGGGCAGTGGAA 15254314 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 ||||||||||| || |||| || || ||||| Sbjct 15254315 GCTGTGGGCATTGGGGCCAAAAGCAGACTGTT 15254346 >seq7 Length=23593460 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| ||| |||||| || || |||| ||| || ||||| || || | ||||| Sbjct 3931325 CCTCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 3931266 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| |||||| || || || ||||| ||||||||||||||||||||| ||||| | Sbjct 3931265 TCAGCCAGAAGATGGCGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCGAAGG 3931206 Query 126186 C 126186 | Sbjct 3931205 C 3931205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353413327000