Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq10 259 5e-64 >seq10 Length=32721116 Score = 259 bits (286), Expect = 5e-64 Identities = 1033/1608 (64%), Gaps = 51/1608 (3%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||| | |||||| ||||||||| || ||||| || ||||| | || | Sbjct 10504995 TACAACTTCTTCGGCTTCAAGACTCTGGAGCGTTCCTACCTGCTGAAGATCAACGGGAAA 10504936 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||||||||||| || |||| ||| | || | | ||||||||||| | ||| Sbjct 10504935 GTGGCCGAGCGACCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATTCACGGGCGAGAC 10504876 Query 93838 AT----GCCGAATGTTTTGCGGG-CTTTCAGAGACATGCGGGACAAGAGGTATACCATGG 93892 || |||| || || | | | || | || ||| ||| ||| ||| | Sbjct 10504875 ATCGACGCCGCC-GT----CGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACG 10504821 Query 93893 CCACCCCGACCCTGTTCAACGCGGGGACC--CCGGTGCCACAGATGTCTTCGTGTTTCCT 93950 || | |||||||| |||||||| |||||| |||| || ||| |||| || ||||| Sbjct 10504820 CCTCTCCGACCCTCTTCAACGCCGGGACCAACCGG--CCGCAGCTGTCCAGTTGCTTCCT 10504763 Query 93951 GATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGAC 94010 | | | | |||| |||| |||| || || | ||||| ||| ||| | |||||| Sbjct 10504762 GCTCGCCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGTGCGCT 10504703 Query 94011 CATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTC 94070 ||| || || | ||| || || || || | || | | | || | | ||| Sbjct 10504702 CATTTCCAAGTCCGCTGGCGGGATAGGCGTGGCGGTGAGCTGCATCCGATCGACGGGAAG 10504643 Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130 ||||||| || ||||| |||| ||||||||| | || || ||||| | || | ||| Sbjct 10504642 CTACATCGCAGGCACCAACGGCAACTCCAACGGGTTGGTGCCGATGCTGAGAGTTTACAA 10504583 Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 |||| | || || ||||| |||||||| || | ||| || | ||||| | || Sbjct 10504582 CAACACCGCTCGGTACGTCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTA 10504523 Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250 || ||||| |||||| |||||| | ||| | || ||| |||||| || || Sbjct 10504522 CCTGGAGCCATGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAA 10504463 Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310 || | |||| ||||||||||| |||||||| | ||| | || ||||| || ||||| Sbjct 10504462 GGAGGAGCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATGAA 10504403 Query 94311 ACGCGTCGAGAAAAACTCCGCCTGGAGTCTTT--TTTGTCCCAATGAATGTCCCGGACTG 94368 | || |||| ||| | |||| || || | ||||||| || ||||| || ||| Sbjct 10504402 GAGAGTGGAGAGCAACCAGGACTGG--TCCTTGATGTGTCCCAGCGAGTGTCCTGGGCTG 10504345 Query 94369 TCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAG 94428 ||| || ||| | || || | | || | || || | | || | Sbjct 10504344 GACGAGTGCTGGGGAGAGGAGTTCGAGAAGCTCTACACCAAATATGAGAAGGAAGGGAGA 10504285 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 | | || ||| || | || | |||| ||| | ||| | || ||| || Sbjct 10504284 GTGAAGAGGGTGGTGAAGGCGCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAA 10504225 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 || || || |||||||| | | ||||||| || |||| ||| |||||||||| || Sbjct 10504224 ACCGGGACCCCCTACATGCTCTACAAGGACGCTTGCAACCGGAAGAGCAACCAGCAGAAC 10504165 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || || |||||| || || || ||||| ||| | || ||||| || |||| Sbjct 10504164 CTGGGCACCATCAAGTGCAGCAACCTCTGCACGGAGGTGGTGGAGTACACCAGCAAGGAC 10504105 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668 ||| | || || || ||||||| ||||||| ||| | || | || || | ||| Sbjct 10504104 GAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCT--CAACAT--GTACGTCACGCCAGA 10504049 Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGG--ATGGTCT 94726 || ||| ||||| | || |||| | | || | |||| || || Sbjct 10504048 GCGG--ACT------TTCGACTTCAAGAAGCTGGCCTCCGTCACC--AAGGTAATTGTGA 10503999 Query 94727 TGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAA 94786 ||||| |||| | | ||||||| |||| |||||| || || || || |||| || | Sbjct 10503998 AAAACCTCAACAAGATCATCGACATCAACTACTACCCGGTTCCTGAAGCTGAGACTTCCA 10503939 Query 94787 ACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGA 94846 || | || |||| ||||| ||||||||||||||| | || ||||| | | ||| Sbjct 10503938 ACAAGCGCCACAGGCCGATCGGGATCGGCGTCCAGGGTCTGGCCGACGCCTTCATCCTGA 10503879 Query 94847 TGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCA 94906 |||| | || | ||| | ||| || | | || | | || ||||| | || Sbjct 10503878 TGCGGCACCCGTTCGAAAGTCCCGAAGCTCAGCTGCTCAACATCCAGATCTTCGAGACCA 10503819 Query 94907 TTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCG-----GACGGCGGGCC 94961 | || ||| ||| || | | ||| || | || ||| || ||| || Sbjct 10503818 TCTACCACGCCGCCCTGGA-------GGCCAGCTG-CGAGCTCGCCGCAGAGCTCGGCCC 10503767 Query 94962 ACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGG 95021 |||| ||| | || |||||| | ||||||| | |||| |||| | |||| Sbjct 10503766 CTACGAGACGTACGAGGGCTCGCCCGTCAGCAAGGGCATCCTCCAGTACGACATGTGGGA 10503707 Query 95022 TGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCT-CTACGCGCTGATGTTATCAAACACG 95080 || ||| | | || | |||||| ||||| || | | | |||||||| Sbjct 10503706 GAAGACGCCGACCGACCTTTGGGACTGG-AAGCTGCTGAAGGAAAAGATCGGCAAACACG 10503648 Query 95081 GTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTG 95140 | |||| ||| ||||| |||| |||||||||||||||||||| || |||||||| | Sbjct 10503647 GCGTGAGGAACAGCCTGCTGCTGGCGCCCATGCCCACGGCCTCCACCGCCCAGATCCTGG 10503588 Query 95141 GCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCG 95200 ||||||||||||| |||| | | |||| |||| | |||| | | ||||||| ||| Sbjct 10503587 GCAACAACGAGTCCATCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCG 10503528 Query 95201 GGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGG 95260 | || |||| | ||||| |||||||| ||| |||||| | || ||||| Sbjct 10503527 GAGAGTTCCAGATTGTCAACCCTCACCTCCTCAAGGATCTGACGGAGCGCGGCCTGTGGA 10503468 Query 95261 GTGACAAGGTCAAGAACCAACTGCTACGC-GCCAACGGCTCCGTCCAG 95307 || || | |||||| | ||| | ||| |||||| ||| ||||| Sbjct 10503467 ACGAGGAGATGAAGAACAAGCTGAT-CGCAAACAACGGATCCATCCAG 10503421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723045399000