Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq10 246 3e-60 seq23 84.2 2e-11 seq3 82.4 8e-11 >seq10 Length=32721116 Score = 246 bits (272), Expect = 3e-60 Identities = 954/1473 (65%), Gaps = 42/1473 (3%) Strand=Plus/Plus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | | || | ||| ||||| ||||| || || || || |||| || || Sbjct 10503554 TTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTG 10503613 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194 |||||| ||||| || || |||| || |||||| | || | ||||||| | Sbjct 10503614 GGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGC 10503673 Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT 153254 || ||| ||||| || | | ||| ||| | ||||||||||||||| | | || Sbjct 10503674 AGCTTCCAGTCCCAAAGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCC 10503733 Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTG-GGCCAGTTCGCA 153313 ||| |||| ||| | |||| |||| |||| || || ||| || ||||| Sbjct 10503734 TTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGA-GCTCTGCGGCGAGCTCGCA 10503792 Query 153314 GCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGC 153373 ||| ||||| || ||| | | ||| ||||| ||| ||| || | ||||| | || Sbjct 10503793 GCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGC 10503852 Query 153374 TTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACC 153433 ||| || ||| |||| |||| ||| | |||||||||||||||||||||| || Sbjct 10503853 TTCGGGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCC 10503912 Query 153434 GACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTC-GCGCTCGCTATGGGATAGTGAT 153492 || ||||| || | || || |||| | ||| || | | || |||| | Sbjct 10503913 GATCCCGATCGGCCTGTGGCGCTTGTTG-GAAGTCTCAGCTTCAGGAACCGGGTAGTAGT 10503971 Query 153493 TGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCT 153552 || ||||| || ||||||||||| ||| | || || || | | || |||| Sbjct 10503972 TGATGTCGATGATCTTGTTGAGGTTTTTCACAATTACCTTGGTGACGGAGGCCAGCTTCT 10504031 Query 153553 CGAAATCATAGGTCATTTC-GTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGA 153611 ||| || | ||| || | || |||| ||| || | ||| || || ||||| Sbjct 10504032 TGAAGTCGAAAGTCCGCTCTGGCGTGACGTA--CAT--GTTGAGGGCGATGGAGGCCAGG 10504087 Query 153612 TTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTG 153671 || ||||||||| ||| || | | |||||| ||| | ||| | ||||||||||||| Sbjct 10504088 TTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTG 10504147 Query 153672 CATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGC 153731 || || ||| ||||| || ||||| ||||| || || ||||| ||||| ||| ||||| Sbjct 10504148 CACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGC 10504207 Query 153732 ATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTA-TGCAGGTCCTGCGC 153790 ||||| || ||||| ||| || | |||| ||| | || || | |||||| Sbjct 10504208 ATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGAT-GGCGTACCAGAGCTGCTGCGC 10504266 Query 153791 --TC-GCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAA 153847 || ||||| || | | || || |||| ||| ||| || ||| || Sbjct 10504267 CTTCACCACCCTCTTC---ACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAA 10504323 Query 153848 CTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACT-GATGCGGACACATCAGCGACCACA 153906 ||| || || |||| ||| | || || ||||||| | || |||||||||| ||||| Sbjct 10504324 CTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTG-GGACACATCAAGGACCAGT 10504382 Query 153907 TATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGT 153966 | || | | || | ||||||||| || || | ||| | ||||| | |||| Sbjct 10504383 CCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGT 10504442 Query 153967 CGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCTATAGAT 154024 | | || | ||| |||||| || |||| ||||| | || | | | | Sbjct 10504443 CTCTGGCTCTCTGC--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACAC 10504500 Query 154025 GTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC---TTTACGCTTTCCGCCCTG 154081 |||| |||||| || || | ||| | ||| | ||| || | | || |||||||| Sbjct 10504501 GTCGAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTG 10504560 Query 154082 ATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGT 154141 ||||||| || | | |||||| | || | || ||| || ||| ||| | | | | Sbjct 10504561 GTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTT 10504620 Query 154142 GCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTA-----ACG 154196 ||||||||| ||| | ||| || || | |||||| | | ||| Sbjct 10504621 GCCGTTGGTGCCTGCGATGTAGCTTCC-----CGTCGATCGGATGCAGCTCACCGCCACG 10504675 Query 154197 CCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTC-GC-CCAGCGTCCTGTAGATGC 154254 || || ||||| || |||| || ||| |||||| | || ||| || |||||||| Sbjct 10504676 CCTATCCCGCCAGCGGACTTGGAAATG--AGCGCACACTGCTTCAGGGTGTCGTAGATGC 10504733 Query 154255 CGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCG 154314 | |||||||| ||||| | | |||||| ||| || ||| ||||| | | Sbjct 10504734 CTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTGG 10504793 Query 154315 TTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGT 154374 | || || |||||||| ||| ||||| || ||| || | || | | || Sbjct 10504794 TCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGT 10504853 Query 154375 ACGTTTCGATGGCGTCTTCGATATCATCG-CCGTGAATGCCGAGCGCGACGCGCATGAGC 154433 | || |||| |||| | ||||| || ||| |||||||| || | || || | ||||||| Sbjct 10504854 AGGTCTCGACGGCGGCGTCGATGTC-TCGCCCGTGAATCCCAACCGACACCCTCATGAGC 10504912 Query 154434 ATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGG 154493 ||||||||||| || ||||| ||| | || ||||||| || || | || || Sbjct 10504913 ATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACGCTCCAGA 10504972 Query 154494 GTTTTGTAACCGAAATACTTGTATTCAAAATCT 154526 || ||| | ||||| | ||||| ||||||| Sbjct 10504973 GTCTTGAAGCCGAAGAAGTTGTAGGAAAAATCT 10505005 >seq23 Length=24361341 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || | ||||||||| || || || || || || ||||| || | | Sbjct 2609119 GACTCCTTCTGGACGTTGTAGTCCGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCA 2609060 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| ||||| || |||||||| || ||| | |||| || | Sbjct 2609059 AAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC-TGAATCTTTGCCTTCAC 2609001 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||| || | | ||||||||| | || | || || ||||| || ||||| Sbjct 2609000 GTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATAGTCTTCCCAGTGAGGGTTTT 2608941 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 2608940 CACGAAAATCTGCAT 2608926 >seq3 Length=27041879 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||| | || ||||| | |||||| |||||| | || ||| ||||| ||||||||| | Sbjct 15255860 TGTATTCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGT 15255919 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 || | || | ||||| ||||| ||| ||||||||||||| Sbjct 15255920 TGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGG 15255959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262244918000