Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq10 203 3e-47 seq3 98.7 9e-16 >seq10 Length=32721116 Score = 203 bits (224), Expect = 3e-47 Identities = 516/770 (67%), Gaps = 24/770 (3%) Strand=Plus/Plus Query 146048 CCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACA 146107 |||||| ||| | ||||||| | ||| ||||| |||| || || | | || | Sbjct 10503492 CCTTGAGGAGGTGAGGGTTGACAATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGA 10503551 Query 146108 CGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGG 146167 |||||||||| ||| ||||| ||||||||||| || || ||||| || || | || | Sbjct 10503552 TGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCG 10503611 Query 146168 TAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCCC--- 146224 | |||||| ||||| ||||| ||| |||||||||||| | ||||||||| Sbjct 10503612 TGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCA 10503671 Query 146225 GTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCA 146284 | || || | | ||| |||| | || || || | | | ||||||| || | Sbjct 10503672 GCAGCTT----CCAGTCC-CAAAGG-TCGGTCGGCGTCTTCTCCCACATGTCGTACTGGA 10503725 Query 146285 TAGTGCC---GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTT-G 146340 |||| || || | | || |||||||| || || || ||| | ||| | Sbjct 10503726 GGATGCCCTTGCTGACGGGCGAGCC---CTCGTACGTCTCGTAGGGGCCGA-GCTCTGCG 10503781 Query 146341 GCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTG 146400 || || |||||||| || ||||| || | ||| |||||||| |||| | |||| Sbjct 10503782 GCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTG 10503841 Query 146401 ACGCTCCTGGCCTCCTCG-CTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGA 146458 | || ||| || | | || ||| | ||| | || | || | ||||||||||| | Sbjct 10503842 A-GCAGCTGAGCTTCGGGACTTTCGAACGGG-TGCCGCATCAGGATGAAGGCGTCGGCCA 10503899 Query 146459 GACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCAG 146518 ||||||| | |||| || | || | ||| |||||| || |||| | | | Sbjct 10503900 GACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCAGCTTCAGGAA 10503959 Query 146519 TGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAAC 146578 || |||| |||| ||||||||||||||||||| || ||| | | || || | Sbjct 10503960 CCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACAATTACCTTGGTGACGG 10504019 Query 146579 GATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGA 146638 |||| |||| || || | | | ||| |||| || |||||| ||||| Sbjct 10504020 AGGCCAGCTTCTTGAAGTCGAAAGTCC--GCTCTGGCGT-GACGTACATGTTGAGGGCGA 10504076 Query 146639 TAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGC 146698 | ||||||| ||| || ||||| |||||||||| | |||| ||| | ||| | || Sbjct 10504077 TGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGC 10504136 Query 146699 AGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGT 146758 |||||||||||||||||||| |||||| || | ||||| || | |||||| | || Sbjct 10504137 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGT 10504196 Query 146759 CCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATG 146808 |||||||||||||||| || |||||||||| | || ||||| |||| Sbjct 10504197 CCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATG 10504246 >seq3 Length=27041879 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || ||||| ||| || ||||| ||||| Sbjct 11046881 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCG 11046940 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| | |||||| || || || ||||||||||| ||| ||| || ||| Sbjct 11046941 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTA 11047000 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||| || | ||| || || | ||| | ||||||||||| || ||| Sbjct 11047001 ACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTT 11047060 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 11047061 TTCACAAAGATCTGCAT 11047077 Score = 98.7 bits (108), Expect = 9e-16 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146686 ACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAAC 146745 |||||||| | |||||| |||||| |||||||| |||||| ||||| ||||| | | Sbjct 15255868 ACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTC 15255927 Query 146746 TTGTTGCAGGGGTCCTTGTAGAGCATGTACGG 146777 ||||||||| ||||||||||||||||||||| Sbjct 15255928 CTGTTGCAGGCGTCCTTGTAGAGCATGTACGG 15255959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500651406000