Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq10 178 1e-39 seq3 95.1 1e-14 >seq10 Length=32721116 Score = 178 bits (196), Expect = 1e-39 Identities = 891/1400 (64%), Gaps = 36/1400 (3%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 || || ||||| || || || ||||||||| | || | | || | ||||| || Sbjct 10504938 AAAGTGGCCGAGCGACCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATTCACGGGCGA 10504879 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 |||||||| ||| ||| || ||| | | |||| | || | ||||| ||||| Sbjct 10504878 GACATCGACGCCGCCGTCGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCC 10504819 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 ||| || | ||| |||||| || || ||| ||| |||| || || ||||| Sbjct 10504818 TCTCCGACCCTCTTCAACGCCGGGACCAACCGGCCGCAGCTGTCCAGTTGCTTCCTGCTC 10504759 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||||||||| || ||||| || || || | || ||| | ||| Sbjct 10504758 GCCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGTGCGCTCATT 10504699 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAG-GCCGCGGAAGCCG 123196 ||||| | | ||||| ||||||||| ||| | | | || | || |||||| Sbjct 10504698 TCCAAGTCCGCTGGCGGGATAGGCGTGGCGGTGAGCTGCATCCGATCGACG-GGAAGCTA 10504640 Query 123197 CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAA 123256 |||| | ||||| |||| | | || |||| | | | |||||| |||||||||| || Sbjct 10504639 CATCGCAGGCACCAACGGCAACTCCAACGGGTTGGTGCCGATGCTGAGAGTTTACAACAA 10504580 Query 123257 CGCCGTGCGGCACGTCGACCAGGGCGGCAA-ACGCAA--AGGCGCGATGGCGATCTATCT 123313 | ||| ||| ||||||||||||||||||| | | | || || | || || || || Sbjct 10504579 CACCGCTCGGTACGTCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTACCT 10504520 Query 123314 AGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGA 123373 || || |||||| | || |||| ||| || | | | || |||| || ||| Sbjct 10504519 GGAGCCATGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGA 10504460 Query 123374 AGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACG 123433 || ||| |||| | || | || ||||| || ||| | || || |||| ||| | Sbjct 10504459 GGAGCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATGAAGAG 10504400 Query 123434 CGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCG-GTGTCCCGGCTTGAGCG 123492 || | | || | ||||| | ||||||||| | || |||||| || || || Sbjct 10504399 AGTGGAGAGCAACCAGGACTGGTCCTTGATGTGTCCC-AGCGAGTGTCCTGGGCTGGACG 10504341 Query 123493 ACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCA-----A 123547 | | || | |||| || || | ||| | |||| ||| ||||| | | Sbjct 10504340 AGTGCTGGGGAGAGGAGTTCGAGAAGCTCTACACCAAATATGAGAAGGAAGGGAGAGTGA 10504281 Query 123548 ACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGA 123607 | ||| | || | | | ||| | | || | | || ||||| | || ||| Sbjct 10504280 AGAGGGTGGTGAAGGCGCAGCA---GCTCTGGT--ACGCCATCATCGAGTCCCAGACCGA 10504226 Query 123608 AACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAA 123667 |||||| || || |||||||||||||| ||||| |||||| |||| | ||| ||| || Sbjct 10504225 AACCGGGACCCCCTACATGCTCTACAAGGACGCTTGCAACCGGAAGAGCAACCAGCAGAA 10504166 Query 123668 CTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA---CAGCGATGC 123724 | |||| || || || || || || || ||| | || | | || || |||| | | Sbjct 10504165 CCTGGGCACCATCAAGTGCAGCAACCTCTGCACGGAGGTGGTGGAGTACACCAGCAAGGA 10504106 Query 123725 CGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGT----CGAAA 123780 || | |||||||| || || |||| || || | | || | ||| | | | Sbjct 10504105 CG---AGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGA 10504049 Query 123781 ACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGA 123840 ||| |||| | ||| | | ||| | | || || | || || || | | Sbjct 10504048 GCGG-ACTTTCGACTTCAAGAAGCTGGCCTCCGTCACCAAGGTAATTGTGAAAAACCTCA 10503990 Query 123841 ACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGC-GCGTTTGTCTAATTTGAAA 123899 |||| || ||||| | || | || || | ||||| | | | || || | Sbjct 10503989 ACAAGATCATCGACATCAACTACTACCCGGTTCCTGAAGCTGAGACT-TCCAACAAGCGC 10503931 Query 123900 CACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATG 123959 ||||| ||| |||| | ||| | || || |||||||||| || | || |||| Sbjct 10503930 CACAGGCCGATCGGGATCGGCGTCCAGGGTCTGGCCGACGCCTTCATCCTGATGCGGCAC 10503871 Query 123960 CCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTAC 124019 |||| |||||| |||||| || |||| || | || || ||| || || || || Sbjct 10503870 CCGTTCGAAAGTCCCGAAGCTCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACCAC 10503811 Query 124020 GGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCG 124079 | ||| ||||||| |||||||| || || | | |||| | ||||| | |||| | Sbjct 10503810 GCCGCCCTGGAGGCCAGCTGCGAGCTCGCCGCAGAGCTCGGCCCCTACGAGACGTACGAG 10503751 Query 124080 GGC-AGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAA 124138 ||| ||||| | ||| || || | ||||||||||||||| | || ||||| | Sbjct 10503750 GGCTCGCCCGTC-AGCAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACGCCGACCGA 10503692 Query 124139 TTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGTAACTCG 124196 | |||||||||| | | || || | |||| | ||||| || | ||| Sbjct 10503691 CCTTTGGGACTGGAAGCTGCTGAAGGAA--AAGATCGGCAAACACGGCGTGAGGAACAGC 10503634 Query 124197 CTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCC 124256 ||| || ||||| |||||| ||||| |||| || || || | || |||||||| ||| Sbjct 10503633 CTGCTGCTGGCGCCCATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCC 10503574 Query 124257 TTCGAGCCGTTCACTAACAA 124276 ||||| ||| ||| | ||| Sbjct 10503573 ATCGAGGCGTACACCAGCAA 10503554 >seq3 Length=27041879 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || || || |||||||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct 15255971 GAGACGGGTACGCCGTACATGCTCTACAAGGACGCCTGCAACAGGAAGACCAACCAGCAA 15255912 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 || |||| || || || | || ||||| ||| | || ||| | ||||||| Sbjct 15255911 AATCTGGGCACCATCAAGTCCAGCAATCTCTGCACAGAGATTGTTGAATACA 15255860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003058749000