Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq24 118 2e-21 seq4 89.7 7e-13 >seq24 Length=30408201 Score = 118 bits (130), Expect = 2e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || |||||||| || || || || || ||||||||||| ||||||||| | Sbjct 29677427 GCGGTGTTGACGATGTCAAAGCCGACTGAGCCTCCAAAGGTGCTGGGCTTCCAGTACTCT 29677368 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 || ||||| ||| ||| |||| || ||||| | ||| || |||||||||| ||| | Sbjct 29677367 GGTGAGCAAATGGGATTCCCCATCAGGCCTTTGAGGGAGAAAGGAGCCCCCATCTCCACC 29677308 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || |||| || || ||||| | || || || || |||| | ||| |||||| Sbjct 29677307 ATCGTCTCCCCAAAAATGGCGTTCGACCGGGGCTTCTCCACGAGCAGGCCGAGGTAGAGC 29677248 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| || ||||| ||||| || | |||| ||| || || || || || ||| Sbjct 29677247 TCCACAGCGTCAACGTCTCCATACAGCTCCTCCAGTATGGCGGCCATTTCTTTTTCTCCT 29677188 Score = 96.9 bits (106), Expect = 5e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 |||||| || || | ||| || ||||| ||| ||||| ||||| || | | ||| Sbjct 29674895 TCACCTACGACTCCCATAGGGGTTGGGCAATCAGCCGGAACTGGAGGAAGGGCACGGGTA 29674836 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| ||||| ||| | ||||||||||| ||||| |||||||| |||||| Sbjct 29674835 TAGTAGGACAGATTGGAATAGGCTTCCCAGCTTTTGTATCCATAATCCGCATTGTAGGTA 29674776 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCTA 10537 || |||||||||||||| | ||| | |||| Sbjct 29674775 GGAGGACTGTCAATCATATGGGATCGTGCTA 29674745 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781 ||| ||| || |||| ||| ||||| | |||||| |||| || ||||| | | | Sbjct 29675868 TAAGGATGAGCCGAGAGGTCTGAAAGAGTCTTTCGTCATCCCAGTCTGGGTGAACTTCCT 29675809 Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841 | | ||| || || |||| |||||| || | ||||| ||||||||||||||||| | | Sbjct 29675808 TCAAAACGTCACACACCCGGTTGTGCTCACGGAGCCAGATGGTGGCGTACATCATGAGGC 29675749 Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGA 9885 | || || | ||| ||| | || | || || || |||||| || Sbjct 29675748 CTGGGACCAGACCGAACGCCTCGTGGCCAACAGCGAAGCGCTGA 29675705 >seq4 Length=33259606 Score = 89.7 bits (98), Expect = 7e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781 ||||||| || | ||||| || || | ||||||||| |||| ||| |||||| || Sbjct 26560868 TAATGATAAGTCTGGTGGTCTGGAAAAGCTGCTCGTCCTCCCAGGTCGGATGTTCGCCTT 26560809 Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841 | || | || || |||| |||||| || |||||||| |||||||||||||| | | | Sbjct 26560808 TCAGGATGTCACACACCCGGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATGGTGAGGC 26560749 Query 9842 CCGGCACTAAACCAAACACTTC 9863 | || || | || |||||||| Sbjct 26560748 CTGGGACGAGCCCGAACACTTC 26560727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723727773835000