Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq10 136 5e-27 seq3 104 3e-17 seq5 93.3 5e-14 seq7 87.8 2e-12 >seq10 Length=32721116 Score = 136 bits (150), Expect = 5e-27 Identities = 890/1405 (63%), Gaps = 56/1405 (4%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 10503548 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 10503607 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || ||||||||||| |||| || |||||||| | | || | || |||| Sbjct 10503608 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCC 10503667 Query 116023 TTGAGGGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGG 116079 || || | |||||| | || | | |||| ||||||||| || ||||| Sbjct 10503668 TTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGGCGTCT---TCTCCCACATGTCGTACTGG 10503724 Query 116080 AGGAT-ACCTTG-GGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 116137 ||||| ||||| |||| ||||| ||||| | ||||| || ||||| | | | Sbjct 10503725 AGGATGCCCTTGCTGACG--GGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGG 10503782 Query 116138 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA 116197 | | ||| |||| ||||| ||||| ||||| || || ||||| || || | || | Sbjct 10503783 CGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGA 10503842 Query 116198 TTGCCTTGGCCTCGTCGGA--ATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAG 116255 || || ||| ||| || |||| | | || || || || | || || || Sbjct 10503843 GCAGCTGAGCTTCG--GGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAG 10503900 Query 116256 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCAC 116315 ||| ||||| |||| || || || | || | | | || || | ||| || Sbjct 10503901 ACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCAGCTTCAGGAAC 10503960 Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375 || || | || | ||||| | | | || || ||||| | ||||| |||| Sbjct 10503961 CGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACAATTACCTTGGTGACGGA 10504020 Query 116376 ATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 116435 ||||| | | | || ||| | || |||| |||| ||| | |||||||| Sbjct 10504021 GGCCAGCTTCTTGAAGTCGAAAGTCCG---CTCTGGCGTGACGTACATGTTGAGGGCGAT 10504077 Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495 || ||||| || || || | ||| ||||| |||||||| | | ||||| || Sbjct 10504078 GGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCA 10504137 Query 116496 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 116555 | || | ||| |||||||||| ||||| || || ||| ||| || || || Sbjct 10504138 GAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTC 10504197 Query 116556 CTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA- 116614 |||||||||||| || || ||||| || || || ||||||| || || || | ||| | Sbjct 10504198 CTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAG 10504257 Query 116615 CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGG 116674 | | ||| || ||| || ||| ||| |||| ||| || || |||||||| Sbjct 10504258 CTGCTGCGCCT-TCACCACCCTCTTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCT 10504316 Query 116675 CCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGA 116733 ||| ||||| || ||| |||| ||| ||||| || || ||||| | | Sbjct 10504317 TCTCGAACTCCTCTCCC-CAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCAAG 10504375 Query 116734 GACCATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG 116791 ||||| | || | ||| || | ||||||||| ||||| |||||||| | || Sbjct 10504376 GACCA--GTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGT 10504433 Query 116792 AGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 116850 |||| || || | | | ||| || | | || || || || ||||| ||| Sbjct 10504434 AGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGAAG 10504492 Query 116851 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTGCGACG 116906 || | | || |||||| || |||||||||| |||| | ||| || | | Sbjct 10504493 TCGAACACGTCGAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTG 10504552 Query 116907 ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACC 116966 || |||||| || |||| || || ||| | || | ||||| || | | || Sbjct 10504553 -CCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCC 10504611 Query 116967 ATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCT-CTGAC-ATCG--TGGA 117022 | || | ||| || || || | ||| ||| | | | | | |||| || | Sbjct 10504612 GTTGGAGTTGCCGTTGGTGCC-----TGCGA----TGTAGCTTCCCGTCGATCGGATGCA 10504662 Query 117023 TGT-----GCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACT 117077 | || || || || || || |||| || || | || |||| | | || | Sbjct 10504663 GCTCACCGCCACGCCTATCCCGCCAGCGGACTTGGAAATGAGCGCACACTGCTTCAGGGT 10504722 Query 117078 GCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTG 117137 | ||||||| || ||||| ||| |||| | |||| |||||||| || |||| || Sbjct 10504723 GTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTG 10504782 Query 117138 TGGCC--TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TG 117194 |||| ||| || || |||||||||||||| || | |||||| ||||| || | | Sbjct 10504783 CGGCCGGTTG--GTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTC 10504839 Query 117195 GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGA 117254 |||| | ||||||||| | | | | | |||||| ||||||||| || | || Sbjct 10504840 CGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGAATCCCAACCGA 10504899 Query 117255 GACCCGCATAAACATGTATTGGGGT 117279 |||| ||| | ||||| || ||| Sbjct 10504900 CACCCTCATGAGCATGTGCTGCGGT 10504924 >seq3 Length=27041879 Score = 104 bits (114), Expect = 3e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||||| ||||| | ||||||||||||||||||| ||||| ||||| Sbjct 15254255 TAGATGTTGCTTGTGTATGCCTCAATGGACTCATTGTTACCCAAGATCTGGGCAGTGGAA 15254314 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 ||||||||||| || |||| || || ||||| Sbjct 15254315 GCTGTGGGCATTGGGGCCAAAAGCAGACTGTT 15254346 >seq5 Length=26266306 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 127553 ATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATC 127612 |||||||| || ||| || |||||||||||||| || | |||||||| |||| | || Sbjct 12374839 ATGAGTTCGTTGGAGTAGGTAAGACCTGGCATGAGGCCTCTCTTCTTCAGCCAGTAGATA 12374898 Query 127613 GCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTC 127671 ||| |||||||| |||||||| ||||||||||| || || || | |||||||| Sbjct 12374899 GCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCAAAAGCCACAAGACGCTC 12374957 >seq7 Length=23593460 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| ||| |||||| || || |||| |||||| ||||| || || | ||||| Sbjct 3931325 CCTCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 3931266 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| || || || || |||||||||||||| ||||||||| ||||| | Sbjct 3931265 TCAGCCAGAAGATGGCGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCGAAGG 3931206 Query 127659 C 127659 | Sbjct 3931205 C 3931205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507008279000