Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq10 203 5e-47 >seq10 Length=32721116 Score = 203 bits (224), Expect = 5e-47 Identities = 584/889 (66%), Gaps = 22/889 (2%) Strand=Plus/Plus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 |||||| | ||| ||||| | ||| | |||||| | |||| | ||||||||| Sbjct 10504120 CTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCT 10504179 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TC 205001 ||| ||||| || | ||||||||| | |||| | || | ||| | || |||| || || Sbjct 10504180 CTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTC 10504239 Query 205002 GCAGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAG 205058 | || || | ||| | | | |||| |||| |||||| |||||| Sbjct 10504240 GATGA-TGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTCTTCACTC---TCCCTTCCT 10504295 Query 205059 ACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTG 205115 ||| ||||| ||||| ||| | | || || || | || |||||| |||| | Sbjct 10504296 TCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCA---GCCCAG 10504352 Query 205116 GACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACA 205175 |||| | |||||||||||| ||||| ||| | | | ||| |||| ||| |||| Sbjct 10504353 GACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACA 10504412 Query 205176 GGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGT 205235 |||| |||||||| | |||| || || || | ||| || | || | ||| || Sbjct 10504413 GGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGT 10504472 Query 205236 TCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCC 205294 |||| |||| ||||| ||| || | | |||| |||||| ||||| | ||| ||| Sbjct 10504473 TCTTCTTCAGCTCCAG-GAAGTCGAACACGTCGAAGTGCCATGGCTCCAGGTACATGGCG 10504531 Query 205295 ATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACT 205354 | || || || |||||||| || |||||||| || |||| | |||| ||||| Sbjct 10504532 AAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACT 10504591 Query 205355 CGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCA 205414 | |||||||||||||| ||||||| | | ||||| |||| |||| ||| | | Sbjct 10504592 CTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATG---TAGCTTCCC 10504648 Query 205415 GCCCTCACGTTGGAG---ATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCG 205471 | | | || || | ||| |||| |||||||||| |||||| || | || Sbjct 10504649 GTCGATCGGATGCAGCTCACCGCCACGCCTATCCCGCCAGCGGACTTGGAAATGAGCGCA 10504708 Query 205472 CACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAG 205531 |||| | ||| ||| |||||||||| ||||| |||||| || | | ||| || Sbjct 10504709 CACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAG 10504768 Query 205532 CACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTG 205591 || | ||||| | |||||| || |||| |||||| || || ||||||| || Sbjct 10504769 CAACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTG 10504828 Query 205592 AAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGA 205651 || | |||||| || |||||||||| | || || | || |||||| Sbjct 10504829 AACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGA 10504888 Query 205652 ATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACC 205711 || || | | | |||||||| | ||| || |||| ||| ||| || |||| | | Sbjct 10504889 ATCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATC 10504948 Query 205712 TTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGG 205760 || ||||| |||| | ||| || || || | | || |||||| ||| Sbjct 10504949 TTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGG 10504997 Score = 181 bits (200), Expect = 2e-40 Identities = 352/512 (69%), Gaps = 12/512 (2%) Strand=Plus/Plus Query 204103 GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCT 204162 ||| || ||||||| || ||||| | || || ||||||| ||||| ||| | Sbjct 10503424 GATGGATCCGTTGTTTGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGGCCGCGCTC 10503483 Query 204163 GATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCG 204222 |||| ||| | ||||| ||||||| ||||| || |||||||||||||||| || Sbjct 10503484 CGTCAGATCCTTGAGGAGGTGAGGGTTGACAATCTGGAACTCTCCGGACAGCACCCTGCG 10503543 Query 204223 GGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGT 204282 |||| | | |||| ||||| | | |||| | |||||||||||| | ||||| ||||| Sbjct 10503544 GGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGT 10503603 Query 204283 GCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCT 204342 | ||||||||||||||| ||||| |||||| ||| | ||| |||| ||| || | | Sbjct 10503604 GGAGGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTT 10503663 Query 204343 GCGCTTCAGAGAGGTCCAGTCGTGCA--TCGCACTGGGT-TTCACGCCCCACATGTCGAA 204399 |||||| ||||||| | ||| | | || ||| ||||||||||| | Sbjct 10503664 TTCCTTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGGCGTCTTC---TCCCACATGTCGTA 10503720 Query 204400 CTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATA-AGGCTGATCCTCTT 204458 ||| | |||||| | ||||| || ||||| ||||||| || ||| || |||| Sbjct 10503721 CTGGAGGATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGA-GCTCTG 10503779 Query 204459 CTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGT 204518 | || |||| ||| ||| ||| |||| | ||| |||||||| |||||||| | || Sbjct 10503780 CGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGT 10503839 Query 204519 TTA--ATCTGGCGGCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCGC 204576 | | | ||| || || | | || |||| | | || || | || |||| || Sbjct 10503840 TGAGCAGCTG--AGCTTCGGGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGC 10503897 Query 204577 CAAGCCCTGCACTCCGATTCCCAACGGTCTGT 204608 || ||||| || ||||| || | ||| |||| Sbjct 10503898 CAGACCCTGGACGCCGATCCCGATCGGCCTGT 10503929 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||| | | ||||||| | |||||| | ||| || || || || | Sbjct 10503153 CCTGCTTCCAGCCGAAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTTGGCTCAGCGATAT 10503212 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 | |||||||| |||||||| ||||||||| ||||| || || ||||| ||||| || | Sbjct 10503213 GGATGTTCAGCGACTGGCTCTGGTCGATG-AAGGCTCCACGGTCTGCCGCCATCTTCAGC 10503271 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 | ||||||||| || || ||||| || || || Sbjct 10503272 ACGGTCTTCTGGGAGATTTCCCAAACGGTTTT 10503303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154951514000