Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3 138 1e-27 >seq3 Length=27041879 Score = 138 bits (152), Expect = 1e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| | || || |||||||| ||||| || Sbjct 11046886 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAA 11046945 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | || |||||| ||| |||||| ||| | | Sbjct 11046946 GATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTAACGTT 11047005 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || || | ||||| |||| |||||||||||||| || || ||||| || Sbjct 11047006 CTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGGTTTTCAC 11047065 Query 46582 AAAGATTTGCATTTTGCAC 46600 |||||| ||||| |||||| Sbjct 11047066 AAAGATCTGCATCTTGCAC 11047084 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||| ||||||||||| || ||||| | || || ||||||||||| || || Sbjct 11044876 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 11044935 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | ||||||||| | || | || ||| || ||| ||| || ||||| || Sbjct 11044936 ATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATTTTGGCCTTGACGTTC 11044995 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||||| | |||||| |||| ||||| || ||||| || || || || || Sbjct 11044996 TCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTTACG 11045055 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 11045056 AAGATCTGCAT 11045066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238223363000