Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 2e-12 seq23 86.0 2e-11 >seq3 Length=27041879 Score = 89.7 bits (98), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 450913 AGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAA 450972 |||| ||||||| |||||||||||||||| ||| ||||| ||||| | ||| |||| || Sbjct 26832754 AGCAGTTGGAATCGATCTTGGAACCACCTATTCCTGTGTTGGTGTGTTCCAGCATGGCAA 26832695 Query 450973 TGTAGAAATTATAGCAAATGACCAAGG 450999 || ||||| || || ||||||||||| Sbjct 26832694 AGTTGAAATCATTGCCAATGACCAAGG 26832668 >seq23 Length=24361341 Score = 86.0 bits (94), Expect = 2e-11 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| || ||||| || ||||| || || || || || | | Sbjct 2608926 ATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACTATCACCCTGGAGGTGGAGCCCAGT 2608985 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | || ||| ||||| ||||| ||||| ||||||||||| || Sbjct 2608986 GATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAG 2609045 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | || ||||| || |||||||| | || || |||| || || Sbjct 2609046 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAAC 2609105 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 | | ||||| | || || ||| | || | | ||||| ||| Sbjct 2609106 GTCCAGAAGGAGTCCACCCTCCACCTGGTTCTCCGCCTGAGGGGA 2609150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975717767152700