Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1 230 2e-54 seq3 114 1e-19 seq18 86.0 5e-11 >seq1 Length=29966060 Score = 230 bits (254), Expect = 2e-54 Identities = 938/1469 (64%), Gaps = 16/1469 (1%) Strand=Plus/Minus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 ||| || |||||| ||| || || || || ||||| || | |||||| || ||||| || Sbjct 12095556 TTTGTCGACGGCAGACACGTTTAGGATGCCGTTGGCGTCGATATCAAAGGTAACTTCGAT 12095497 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 || || || ||||| ||||||| || | || | | ||| | ||||| ||| Sbjct 12095496 CTGTGGCACGCCTCTGGGAGCAGGAGGAAGACCCGAGAGCTCAAACTTCCCCAGGAGATT 12095437 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 517428 || || || || | || ||||| || | | || || ||| | | || || Sbjct 12095436 GTTGTCCTTTGTCATGGCTCTCTCACCTTCATAGACCTGAATCAGGACTCCTGGCTGGTT 12095377 Query 517429 ATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAA 517487 |||||| || || | || | |||| | | || || || || ||||||| | | Sbjct 12095376 ATCTGAGTATGTGGAGAAGA-TCTGAGTCTGCTTTGTGGGGATGGTGGTGTTTCGCTTGA 12095318 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 ||| | |||||||| ||||| ||||| || | || || || | || | ||||| | Sbjct 12095317 TAAGAGGGGTCATAACGCCACCGGCTGTCTCAATGCCCAGGGACAAGGGTGCCACATCCA 12095258 Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 517607 || | | || ||| | ||||| || | ||| | || ||||| || || | | Sbjct 12095257 GGAGCAGTAAATCTTGGACATTTTCTGAGGTGTCACCCATGAGGATAGCAGCCTGGACTG 12095198 Query 517608 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 517667 | |||||||| || || ||||||||||| || | | | ||||||| | ||||||||| Sbjct 12095197 CTGCACCATAGGCCACCGCTTCATCAGGGTTGATGCTCTTGTTTAGTTCTCTACCATTGA 12095138 Query 517668 AAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 517727 | || | || || | | | || || || | | || || ||||||| |||| Sbjct 12095137 AGAAGTCCTGCAGGAGCTTTTGGATTTTGGGGATTCTTGTAGAGCCACCAACTAGGACAA 12095078 Query 517728 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 517787 ||| || | || ||||||||||| || | ||| || | || ||||| || || | Sbjct 12095077 CTTCGTGGATCTTGGATTTATCCAGCTTAGCATCTTGTAGGGCCTTCTCAACTGGCTCCA 12095018 Query 517788 GACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 517847 | | ||||| | |||||| || || ||||| || || || || ||| | Sbjct 12095017 GTGTTCCCCTAAAGAGGTCTGAGTTGAGCTCCTCGAAGCGTGCCCTTGT--GATTGAGGT 12094960 Query 517848 -TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGA 517905 || || ||||| || || || | || |||| ||||| | | ||||| || || Sbjct 12094959 GTAAAAGTCAATGCCCTCAAAGAGTGAGTCAATCTCAATGCTTGCCTGAGTGCTGGAGGA 12094900 Query 517906 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTG 517961 | | | || || | ||||| ||||| | ||||| | | ||| | | ||| Sbjct 12094899 CAAGGTCCTCTTTGCTCTCTCACAAGCTGTGCGCAGTCTCCTCACTGCTCTCTTGTTCTG 12094840 Query 517962 ATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGAC 518021 |||| || | || | ||||| || || || || ||| | | || | | Sbjct 12094839 GCTGATG----TCCTTCTTGTGCTTTCTTTTAAACTCCTCCACAAAGTGGCTGACCATTC 12094784 Query 518022 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 518081 | || |||||||| || || || | | || | || | || | | | || | || | Sbjct 12094783 GGTTGTCAAAATCCTCTCCGCCGAGGTGTGTGTCCCCAGCTGTGGATTTCACCTCAAATA 12094724 Query 518082 GTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAA 518141 |||||| |||| | || | | || ||| || || ||||| | |||||| || | Sbjct 12094723 TTCCATCCTCAATGGTCAGGATGGACACGTCAAAAGTGCCTCCACCAAGATCAAAGATGA 12094664 Query 518142 GTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 518201 | ||||| ||| || | ||||||||| || || |||| || ||||| || | Sbjct 12094663 GGACATTGCGCTCTCCTCTTTTGCCTTTATCAAGGCCGTAGGCAATGGCTGCAGCTGTCG 12094604 Query 518202 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 518261 | ||||| || || | | |||||| || || | || ||| ||||| || ||||||| Sbjct 12094603 GCTCATTTATGATGCGGAGAACATTTAGTCCGGAGATCACTCCAGCATCCTTTGTGGCTT 12094544 Query 518262 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTA 518320 | ||||| ||||| ||||| || || || || || || || |||| | || ||| | Sbjct 12094543 GCCTTTGGGAATCATTAAAGTAAGCTGGCACTGTGATGACCGCATTCGACACCCTCTGTC 12094484 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 ||| | | || || ||| | |||||||| | | ||| || ||||| | ||| Sbjct 12094483 CCAGAA-AGGCCTCCGCTATTTCTCTCATTTTAACCAGGACCATCGAGGAAATCTCTTCA 12094425 Query 518381 GGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 518440 || | || ||| ||| || |||| || | | | || || | Sbjct 12094424 GGACAGAATGTCTTAATTTCTCCTTTATATTCCACCTGGACTTTGGGCTTTCCGTTGTCG 12094365 Query 518441 TTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT 518500 || || || || || |||||| |||||| || || || || |||||| ||| | Sbjct 12094364 TTGATCACCTTGAAGGGCCAGAGTTTCATGTCAGACTGGACCACCAGGTCATCAAACCTT 12094305 Query 518501 CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATAT 518560 || ||||| | ||||| |||||||| || || ||||| || || || ||| |||| | Sbjct 12094304 CTTCCAATGAGCCGTTTGGCATCAAAGATCGTGTTGGTGGGGTTCATGGCAACTTGGTTC 12094245 Query 518561 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 518620 ||||| ||||| ||||| || ||||| || ||||| | || || |||||||| Sbjct 12094244 TTGGCAGCATCCCCAATGAGCCTCTCTGTGTCGGTAAAGGCCACGTAGCTGGGAGTTGTC 12094185 Query 518621 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 518680 | || ||||||||||| || |||||||| ||||| |||| || | || || |||||| Sbjct 12094184 CTGTTGCCTTGATCATTGGCGATAATTTCCACTTTTCCATGCTGGAAGACCCCGACACAA 12094125 Query 518681 CTAAAAGTTGTTCCTAAATCAATACCAAT 518709 | || || || | ||| || ||||| Sbjct 12094124 GAGTAGGTGGTGCCCAGATCGATGCCAAT 12094096 >seq3 Length=27041879 Score = 114 bits (126), Expect = 1e-19 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| |||||||| || || || ||| | |||| |||||||||||||||||||| Sbjct 26832564 CAAAAACTGTATTGGTAGGGTTCATGGCAACCTGATTCTTGGCTGCATCTCCAATCAGCC 26832623 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| ||||| || | ||||| || || || | || ||||| ||||| |||| Sbjct 26832624 TCTCTGTATCTGTGAAAGCCACATAGCTGGGTGTGGTCCTGTTGCCTTGGTCATTGGCAA 26832683 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||||||||| |||| || | ||||| ||||| | | || ||||| | ||| | Sbjct 26832684 TGATTTCAACTTTGCCATGCTGGAACACACCAACACAGGAATAGGTGGTTCCAAGATCGA 26832743 Query 518703 TACCAA 518708 | |||| Sbjct 26832744 TTCCAA 26832749 >seq18 Length=29603586 Score = 86.0 bits (94), Expect = 5e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 517264 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 517323 |||||| ||||| || |||||||| | ||||| || ||||| || |||||||| ||||| Sbjct 16849439 CACATTGAGAATGCCGTTGGCATCAATGTCAAAGGTCACTTCGATCTGAGGGACTCCTCT 16849498 Query 517324 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 517380 ||||||| || || || || | |||| | |||| ||||||||||||| || Sbjct 16849499 GGGAGCAGGCGGAATACCAGTTAATTCAAATTTCCCCAAGATATTATTATCTTTGGT 16849555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780821159417650