Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq10 102 1e-16 seq20 96.9 4e-15 seq21 93.3 5e-14 seq17 93.3 5e-14 seq6 93.3 5e-14 seq4 93.3 5e-14 seq22 84.2 3e-11 >seq10 Length=32721116 Score = 102 bits (112), Expect = 1e-16 Identities = 262/391 (67%), Gaps = 6/391 (2%) Strand=Plus/Plus Query 110270 TGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGG 110329 |||| || || ||| || || || || || ||||| || | |||||| ||| || Sbjct 10504056 TGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGG 10504115 Query 110330 TGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGAT 110389 |||| |||| | ||||| || | |||| | ||| ||| |||| ||||| ||| | Sbjct 10504116 TGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 10504175 Query 110390 TCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTG 110449 | || |||||| || ||||| ||||||||||| ||||| || ||||| ||||| | Sbjct 10504176 TGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGG 10504235 Query 110450 ACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCC 110508 ||| || ||||| | ||| | | | ||| | || | || | |||||| Sbjct 10504236 ACTCGATGATGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTC-TTCACTCTCCCTTCC 10504294 Query 110509 TCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA-CACATCAGAAAGACCCTT 110567 | ||| || |||||||| | | ||| || |||| ||| | ||| || || || Sbjct 10504295 TTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCAC-TCGTCCAGCCCAGG 10504353 Query 110568 CGCCTTGTCGGGACAGAAGAGGGACCAAT-TTCCACCCTCCTCAACCCTCTTCATGAACA 110626 || | |||||| | | |||||| | | || ||| || ||||||||||||| Sbjct 10504354 ACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCT-CTCCACTCTCTTCATGAACA 10504412 Query 110627 GGTCAGGAATCCACATCGCCGAGAAAAGGTC 110657 ||||||| ||||||| || |||||||||| Sbjct 10504413 GGTCAGGGATCCACAAGGCGTAGAAAAGGTC 10504443 >seq20 Length=31600912 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 17200195 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 17200254 Query 136777 GGGAACAGCTTTT 136789 || ||| |||| Sbjct 17200255 CGGGCCAGTTTTT 17200267 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 14795118 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 14795177 Query 136777 GGGAACAGCTTT 136788 || || |||| Sbjct 14795178 CGGGCCATCTTT 14795189 >seq21 Length=29933922 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 15140342 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 15140400 >seq17 Length=12713041 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 2442782 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 2442840 >seq6 Length=24035278 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 16126322 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 16126380 >seq4 Length=33259606 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 13028565 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 13028623 >seq22 Length=28200517 Score = 84.2 bits (92), Expect = 3e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 |||||||| |||||||||||| ||||| |||||||||||||| ||||||||| |||||| Sbjct 27799197 TAGCTCAGCTGGTTAGAGCGTTGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 27799139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975815945000