Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq10 152 6e-32 seq3 100 3e-16 seq5 91.5 2e-13 >seq10 Length=32721116 Score = 152 bits (168), Expect = 6e-32 Identities = 954/1504 (63%), Gaps = 66/1504 (4%) Strand=Plus/Plus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || || | | ||||| |||| ||| || |||||| Sbjct 10503454 CTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGATCCTTGAGGAGGTGAGGGTTGAC 10503513 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 |||| |||||||| | || || | |||||||| | ||||| | || | Sbjct 10503514 AATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGAT 10503573 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| || ||||||||||| || ||||| || |||| || || Sbjct 10503574 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATGGGCGCCAGCAGCAG 10503633 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 106079 ||||| | | || | || ||| |||||| || | | |||||| | | Sbjct 10503634 GCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTTCCAGTCCCAAAGGTC 10503693 Query 106080 GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGGAGAACC 106137 | | || || || ||||||| || | || || | |||||| |||| | ||| || Sbjct 10503694 GGTCGGCGTCTTCT-CCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAG--CC 10503750 Query 106138 CTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 106197 ||| | ||||| |||| || | || | || | || ||||| |||||||||| || Sbjct 10503751 CTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGC 10503810 Query 106198 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 106257 ||| || ||||| || ||||| | || | | || ||||| || || | Sbjct 10503811 GTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAACGG 10503870 Query 106258 GTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 106316 || || ||| || || || | || || ||||| || || || | || || || |||| Sbjct 10503871 GT-GCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGT 10503929 Query 106317 GTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTC 106373 | ||| | || || | | ||| ||| || || || | || |||| |||| Sbjct 10503930 GGCGCTTGTTGGAAGT---CTCAGCTTCAGGAACCGGGTAGTAGTTGATGTCGATGATCT 10503986 Query 106374 GGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGC 106433 ||| || ||||| || | ||| |||| || || | | || ||||| | Sbjct 10503987 TGTTGAGGTTTTTCACAATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCC 10504046 Query 106434 GAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 106493 | |||| |||| ||| | |||||||| || |||| ||||| || ||| || Sbjct 10504047 G---CTCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCT 10504103 Query 106494 CATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCA 106553 | ||||| |||||||| | | || || || | |||| | ||| || || |||| Sbjct 10504104 CGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCA 10504163 Query 106554 AATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 106613 |||| ||||| ||||| |||||| || |||||||||||||||||||| ||||| | Sbjct 10504164 GGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGG 10504223 Query 106614 TCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTG 106672 | || ||||| |||| || || || | ||| | | | ||| || || | || Sbjct 10504224 TTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCT-TCACCACCCTCTTC 10504282 Query 106673 GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTC 106731 | | || ||| ||| || || |||||||| || |||||||| ||| | || || Sbjct 10504283 ACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCC-CAGCACTC 10504341 Query 106732 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCT--CCTCAACC 106789 | || || || || | ||||| | | ||||| | || | ||| || Sbjct 10504342 GTCCAGCCCAGGACACTCGCTGGGACACATCAAGGACCA--GTCCTGGTTGCTCTCCACT 10504399 Query 106790 CGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCT 106849 | ||||||||| ||||| || ||||||| || | || || ||||| | ||| Sbjct 10504400 CTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCC 10504459 Query 106850 TCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTC 106908 || | ||| ||| || | | ||| ||||| || | | || |||||||||||| Sbjct 10504460 TCCTTTCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCATGGCTC 10504518 Query 106909 AAGATAGACTGCGA------TAGATCCCTT-TCGACGCCCAGCTTGATTTACATAGCGCG 106961 || || | |||| | || ||| | | ||||| || | || || || | Sbjct 10504519 CAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCC----TGGTCGACGTACCGAG 10504574 Query 106962 CTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCC 107021 | ||| ||| | || | ||||| || | | || | || | || || || || Sbjct 10504575 CGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCC-- 10504632 Query 107022 GAATACGAGATTTATTGGCTCTCACATC-AT-GGATG---------TGCATCCCAATACC 107070 | ||| || ||| || | || || ||||| || || || || Sbjct 10504633 -----TGCGATGTA---GCT-TCCCGTCGATCGGATGCAGCTCACCGCCACGCCTATCCC 10504683 Query 107071 CCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGA 107130 ||||| |||| || || ||||||||| | | || || | ||||| || | ||| Sbjct 10504684 GCCAGCGGACTTGGAAATGAGCGCACACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCT 10504743 Query 107131 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGTACCAGCA 107188 ||| ||||| |||||| |||||||||||||||| |||||| | ||| || || || Sbjct 10504744 GTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTG--GTCCCGGCG 10504801 Query 107189 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTC 107247 ||||||||||| || | ||||| ||||| || | | |||| || ||| ||||| Sbjct 10504802 TTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGGAGGTTGTAGGTCTC 10504860 Query 107248 CAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTG 107307 | | | | || |||||| |||||| || || | | ||| | ||| | ||||| || Sbjct 10504861 GACGGCGGCGTCGATGTCTCGCCCGTGAATCCCAACCGACACCCTCATGAGCATGTGCTG 10504920 Query 107308 GGGT 107311 ||| Sbjct 10504921 CGGT 10504924 >seq3 Length=27041879 Score = 100 bits (110), Expect = 3e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| ||| |||||| || | ||| ||||| || | ||| ||| || || || Sbjct 15255846 CTCATCTTTACTTGTGTATTCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCC 15255905 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||| | ||||| |||| ||||||| || ||||||||||||||||| ||||| || Sbjct 15255906 CAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACC 15255965 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 |||||| ||||| |||| || || || | ||| Sbjct 15255966 CGTCTCTGTCTGCGACTCGATGATGGCGTACCA 15255998 >seq5 Length=26266306 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||| | | ||| ||||| || ||| || || ||||||||||| || | ||||| Sbjct 12374825 CCTCATCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGACCTGGCATGAGGCCTCTCTTCT 12374884 Query 117353 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 117412 ||| ||| || ||||| |||||| || |||||||| || |||||||| ||||| | Sbjct 12374885 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCAAAAG 12374944 Query 117413 CAAAAAGGCGCTC 117425 | | ||| ||||| Sbjct 12374945 CCACAAGACGCTC 12374957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980615631000