Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3 145 2e-29 seq23 132 1e-25 >seq3 Length=27041879 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||| || ||||| ||||| || || ||||| |||| || || | |||||||| Sbjct 11044857 AACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTC 11044916 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| || | || ||||| || || ||||| ||||| || || Sbjct 11044917 CAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTG 11044976 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| ||||||||||||||||||||| |||||| || ||||| | ||||| Sbjct 11044977 GATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATTGTCTT 11045036 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || |||||||| | ||||| Sbjct 11045037 GCCAGTGAGGGTCTTTACGAAGATCTGCAT 11045066 Score = 113 bits (124), Expect = 1e-19 Identities = 151/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 194935 AGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGC 194994 |||||||| |||||||| || || || ||||| |||| || || | |||||||| ||| Sbjct 11046872 AGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGC 11046931 Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 ||||| || || ||||| || | || ||||| || || ||||| || || || || || Sbjct 11046932 TGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATC 11046991 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| |||||||||||||| || ||| ||||| || ||||| | || || Sbjct 11046992 TTGGCCTTAACGTTCTCAATGGTATC---ACTGGGCTCCACCTCCAGGGTGATGGTTTTG 11047048 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || || | ||||| Sbjct 11047049 CCGGTGAGGGTTTTCACAAAGATCTGCAT 11047077 >seq23 Length=24361341 Score = 132 bits (146), Expect = 1e-25 Identities = 158/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || |||||||| || || | ||||| || | || || | |||||||| Sbjct 2609135 AACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGACAGGGTGCGGCCATCTTC 2609076 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||| || || || ||||| || | || ||||| ||||||||||||||||| || || Sbjct 2609075 CAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTG 2609016 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGT 195107 ||| ||| ||| |||||||||||||| || ||| ||||| || ||||| | || Sbjct 2609015 AATCTTTGCCTTCACGTTCTCAATGGTATC---ACTGGGCTCCACCTCCAGGGTGATAGT 2608959 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || | ||||| ||||| | ||||| Sbjct 2608958 CTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 2608926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481244619175