Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3 118 7e-22 seq23 104 2e-17 >seq3 Length=27041879 Score = 118 bits (130), Expect = 7e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34775 CAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAG 34834 || ||||| ||| || ||||| ||||| ||||| || ||| | || |||| ||||| Sbjct 11046871 CAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAG 11046930 Query 34835 CTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAAT 34894 ||| ||||||||||| || || | |||||||| | || | |||||||| || || Sbjct 11046931 CTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT 11046990 Query 34895 CTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCC 34954 ||| || ||| | || | |||| || ||| || || | ||| |||||||| || Sbjct 11046991 CTTGGCCTTAACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCC 11047050 Query 34955 CGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| || ||||||||||||||||| || Sbjct 11047051 GGTGAGGGTTTTCACAAAGATCTGCATCTT 11047080 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/241 (68%), Gaps = 5/241 (2%) Strand=Plus/Plus Query 34747 AATCATTTCCT-----CCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAAT 34801 |||||||| || ||||||| | | ||| | ||| | ||| ||||||||| || Sbjct 11044827 AATCATTTACTGGCCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGAT 11044886 Query 34802 GTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTG 34861 ||| ||||| || ||| | || |||| |||||||| || || ||||| || || | || Sbjct 11044887 GTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTG 11044946 Query 34862 CTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTC 34921 |||||| | || | ||||| || || || || |||||| | || | || Sbjct 11044947 CTGGTCAGGGGGGATGCCCTCTTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTC 11045006 Query 34922 ACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || || | ||| || || || || ||||| ||||| || ||||||||||| Sbjct 11045007 GCTGGGTTCCACCTCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCAT 11045066 Query 34982 A 34982 | Sbjct 11045067 A 11045067 >seq23 Length=24361341 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 ||||||||||| | | ||||| ||| | ||| || ||||| | ||| |||||||| Sbjct 2609153 TCCTCCCCTCAGGCGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGA 2609094 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 ||| | || |||| ||||||||||| || ||||| || || | |||||||| | || Sbjct 2609093 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 2609034 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || || || || |||||| || ||| | || | |||| || ||| || Sbjct 2609033 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 2608974 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 || | ||| || || || || ||||| || ||||| || |||||||| ||| Sbjct 2608973 CTCCAGGGTGATAGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTTC 2608922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633501088200