Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq10 100 3e-16 >seq10 Length=32721116 Score = 100 bits (110), Expect = 3e-16 Identities = 423/660 (64%), Gaps = 6/660 (1%) Strand=Plus/Plus Query 47993 GTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGAT 48052 ||| || ||||||||||| ||||| | || || || ||||| |||| || || ||||| Sbjct 10504186 GTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGAT 10504245 Query 48053 AGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAG-CTTTATTATCATGTTCGTATT 48111 | | ||| | | ||||| | || |||| || | || | || |||| Sbjct 10504246 GGCGTACCAGAGCTGCTGCGCCTTCACCACC-CTCTTCACTCTCCCTTCCTTCTCATATT 10504304 Query 48112 TAGTATATAACTTCTCAAATTCATCCCCATA-CACATTATCTAACCCAGGACATTCATTA 48170 | || || | |||||| || || || || | ||| | || | ||||||||| || | Sbjct 10504305 TGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCAC-TCGTCCAGCCCAGGACACTCGCTG 10504363 Query 48171 GGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATC 48230 ||||||||||| ||||| |||| | | | ||||| |||| || | || || ||| Sbjct 10504364 GGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATC 10504423 Query 48231 CA-AAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAG 48289 || ||| || ||| | || || | ||| | || || || || | ||| | || || Sbjct 10504424 CACAAGGCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAG 10504482 Query 48290 TTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGG 48349 || || ||||| | | || |||||||| || | || || || | | || || Sbjct 10504483 CTCCAGGAAGTCGAACACGTCGAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGG 10504542 Query 48350 TCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGG 48409 || || || || || || || | || | || || ||||| |||||||| | ||| || Sbjct 10504543 TCTCTTGTTGCCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGG 10504602 Query 48410 GACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATT 48469 || | || || || | || ||||| || | || || ||||| | | || || Sbjct 10504603 CACCAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCCGTCGATCGGATGCA 10504662 Query 48470 ACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGT 48529 || | | | ||||| || || || || || || || |||||| | || ||||| Sbjct 10504663 GCTCACCGCCACGCCTATCCCGCCAGCGGACTTGGAAATGAGCGCACACTGCTTCAGGGT 10504722 Query 48530 ATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTG 48589 || || || ||||| || || || || |||| | || || ||||| |||| || Sbjct 10504723 GTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTG 10504782 Query 48590 CGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGA 48649 ||| | || || | || || | || ||||| || || | ||||| ||||| || Sbjct 10504783 CGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGA 10504842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108624341000