Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 187 2e-41 seq23 109 4e-18 seq18 105 5e-17 seq3 104 2e-16 >seq1 Length=29966060 Score = 187 bits (206), Expect = 2e-41 Identities = 404/594 (68%), Gaps = 14/594 (2%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | || ||||| || |||||| || || | || |||| ||||| Sbjct 12094096 ATTGGCATCGATCTGGGCACCACCTACTCTTGTGTCGGGGTCTTCCAGCATGGAAAAGTG 12094155 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 |||||||| |||||||||||||| ||||| || ||||| || || | || || || Sbjct 12094156 GAAATTATCGCCAATGATCAAGGCAACAGGACAACTCCCAGCTACGTGGCCTTTACCGAC 12094215 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAAT 550171 || || | |||| ||||| || || | |||| ||| || || || ||||| Sbjct 12094216 ACAGAGAGGCTCATTGGGGATGCTGCCAAGAACCAAGTTGCCA-TG--AACCCCACCAAC 12094272 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| ||||| | ||||||||||| ||| |||| | || ||| | Sbjct 12094273 ACGATCTTTGATGCCAAACGGCTCATTGGAAGAAGGTTTGATGACCTGGTGGTCCAGTCT 12094332 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || ||||| | ||||| ||| | | | || | ||||| || | | | || | Sbjct 12094333 GACATGAAACTCTGGCCCTTCAAGGTGATCAACGACAACGGAAAGCCCAA-AGTCCAGGT 12094391 Query 550292 --ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | || ||||| |||| ||| | || ||| | ||||| || ||||| | Sbjct 12094392 GGAAT-ATAAAGGAGAAATTAAGACATTCTGTCCTGAAGAGATTTCCTCGATGGTCCTGG 12094450 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 | ||||||| | ||| ||| || ||| | || || || || |||| || || | Sbjct 12094451 TTAAAATGAGAGAAATAGCGGAGGCCTTTCTGGGACAGAGGGTGTCGAATGCGGTCATCA 12094510 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || ||||| || |||||||| || ||| | ||||| || || ||||||||| || Sbjct 12094511 CAGTGCCAGCTTACTTTAATGATTCCCAAAGGCAAGCCACAAAGGATGCTGGAGTGATCT 12094570 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 | ||||| |||||||| || || || ||||| || || ||||| || |||| || || | Sbjct 12094571 CCGGACTAAATGTTCTCCGCATCATAAATGAGCCGACAGCTGCAGCCATTGCCTACGGCC 12094630 Query 550530 TTGATAAA--CATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 |||||||| || || || | || | ||||| |||||||||||| ||| || Sbjct 12094631 TTGATAAAGGCAAAA-GAGGA-GAGCGCAATGTCCTCATCTTTGATCTTGGTGG 12094682 Score = 158 bits (174), Expect = 1e-32 Identities = 447/682 (66%), Gaps = 10/682 (1%) Strand=Plus/Plus Query 551913 ACTGCTTGCGAAAGAGCCAA-ACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGT 551971 || ||||| || ||||| || | || || | || || | ||||| | | ||||| | Sbjct 12094870 ACAGCTTGTGAGAGAGCAAAGAGGACCT-TGTCCTCCAGCACTCAGGCAAGCATTGAGAT 12094928 Query 551972 AGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGA 552031 || ||| | |||||||| ||||| | | | || | || | ||||| || || || Sbjct 12094929 TGACTCACTCTTTGAGGGCATTGACTTTTACACCTCAATCACAAGGGCACGCTTCGAGGA 12094988 Query 552032 TATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTC 552091 | || || |||||||| |||| | || ||||| || | | || |||| | Sbjct 12094989 GCTCAACTCAGACCTCTTTAGGGGAACACTGGAGCCAGTTGAGAAGGCCCTACAAGATGC 12095048 Query 552092 AAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCC 552151 ||| | ||||||||||| | || ||| |||| || |||||||| ||||||||||| || Sbjct 12095049 TAAGCTGGATAAATCCAAGATCCACGAAGTTGTCCTAGTTGGTGGCTCTACAAGAATCCC 12095108 Query 552152 TAAAATTCGCGAAATG----TTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTG 552207 ||||| | ||| | | || ||| |||||||||| | || |||| | || Sbjct 12095109 CAAAAT---CCAAAAGCTCCTGCAGGACTT-CTTCAATGGTAGAGAACTAAACAAGAGCA 12095164 Query 552208 TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGAC 552267 | || || ||||| || || ||||||||||| ||| | || || ||||| || || Sbjct 12095165 TCAACCCTGATGAAGCGGTGGCCTATGGTGCAGCAGTCCAGGCTGCTATCCTCATGGGTG 12095224 Query 552268 AAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTT 552327 | || ||||| | ||| || | | || | ||||| | || | || || || Sbjct 12095225 ACACCTCAGAAAATGTCCAAGATTTACTGCTCCTGGATGTGGCACCCTTGTCCCTGGGCA 12095284 Query 552328 TAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTA 552387 | || |||| || || ||||||| ||||||| | |||| || || || || | Sbjct 12095285 TTGAGACAGCCGGTGGCGTTATGACCCCTCTTATCAAGCGAAACACCACCATCCCCACAA 12095344 Query 552388 AAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTT 552447 | | ||| | || || || || |||||||| || | | || ||||| | | Sbjct 12095345 AGCAGACTCAGATCTTCTCCACATACTCAGATAACCAGCCAGGAGTCCTGATTCAGGTCT 12095404 Query 552448 TTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAG 552507 |||||| || ||| | || || || || |||| || || | ||| | | | Sbjct 12095405 ATGAAGGTGAGAGAGCCATGACAAAGGACAACAATCTCCTGGGGAAGTTTGAGCTCTCGG 12095464 Query 552508 GTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCA 552567 || ||||||||||||| | || || || || || |||||||| || |||||||| |||| Sbjct 12095465 GTCTTCCTCCTGCTCCCAGAGGCGTGCCACAGATCGAAGTTACCTTTGATATCGACGCCA 12095524 Query 552568 ATGGAATTTTGAATGTGACTGC 552589 | || || | || ||| |||| Sbjct 12095525 ACGGCATCCTAAACGTGTCTGC 12095546 >seq23 Length=24361341 Score = 109 bits (120), Expect = 4e-18 Identities = 120/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 563319 ATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTT 563378 |||||| || ||||| || ||||| || || || ||||| ||||||||||| |||||||| Sbjct 2609081 ATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTT 2609022 Query 563379 ATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAA 563437 ||| ||||| ||| || || |||||| |||||| || | | || || || || | Sbjct 2609021 ATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTG-GGCTCCACCTCCAGGGTGA 2608963 Query 563438 CAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || ||||| || ||||| |||||||| ||||| Sbjct 2608962 TAGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 2608926 >seq18 Length=29603586 Score = 105 bits (116), Expect = 5e-17 Identities = 105/135 (78%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || || || || || |||||||| || ||||| || || ||||||| Sbjct 16851785 ATGCAGTTATCACAGTTCCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACCAAAGATG 16851726 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| || ||||| ||||| |||||||||||||| || || || || Sbjct 16851725 CTGGTACCATCTCTGGCCTCAATGTGCTTCGCATTATCAATGAACCCACAGCCGCAGCCA 16851666 Query 550518 TTGCATATGGACTTG 550532 |||||||||| |||| Sbjct 16851665 TTGCATATGG-CTTG 16851652 >seq3 Length=27041879 Score = 104 bits (114), Expect = 2e-16 Identities = 137/187 (73%), Gaps = 6/187 (3%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | |||||||| ||| ||||||||||| | || |||| ||||||||| Sbjct 26832747 GGAATCGATCTTGGAACCACCTATTCCTGTGTTGGTGTGTTCCAGCATGGCAAAGTTGAA 26832688 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||||||||| ||||| ||||| || || || ||||| ||||||| || || Sbjct 26832687 ATCATTGCCAATGACCAAGGCAACAGGACCACACCCAGCTATGTGGCTTTCACAGATACA 26832628 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAATACT 550174 || | |||| |||||||| || |||| | ||| || || ||||||||||| Sbjct 26832627 GAGAGGCTGATTGGAGATGCAGCCAAGAATCAGGTTGCCA-TG--AACCCTACCAATACA 26832571 Query 550175 ATTTTTG 550181 |||||| Sbjct 26832570 GTTTTTG 26832564 Score = 98.7 bits (108), Expect = 8e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || || ||||| || || || |||||||| || ||||| || || || |||| Sbjct 26832067 ATGCTGTGATCACAGTACCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACGAAGGATG 26832008 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| || |||||| | ||||| ||||||||||| ||||| ||||| Sbjct 26832007 CTGGCACCATCTCTGGCCTCAATGTTTTGCGTATAATCAATGAACCGACTGCAGCTGCTA 26831948 Query 550518 TTGCATATGGACTTGATAA 550536 | || ||||| || || || Sbjct 26831947 TCGCCTATGGGCTGGACAA 26831929 Score = 91.5 bits (100), Expect = 1e-12 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 ||| |||||||||||||||||||| || || || ||||| || ||||||||||| ||||| Sbjct 26830832 AGGAATTCCTCCTGCTCCTCGTGGTGTTCCACAGATTGAGGTGACTTTCGATATTGATGC 26830773 Query 552566 CAATGGAATTTTGAATGTGACTGCT 552590 ||||| || ||||||| ||||| Sbjct 26830772 TAATGGTATCATGAATGTCTCTGCT 26830748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029294677887250