Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq14 150 1e-31 seq4 100 2e-16 >seq14 Length=22457735 Score = 150 bits (166), Expect = 1e-31 Identities = 134/168 (80%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||||| |||||||||| ||||| |||||||| ||||| || ||||| ||||| ||||| Sbjct 14522935 CATGTCCTTGTACTCTGCACCGAAGTGCCTCCATTGGAAACCATACACAGGTCCTAGGTC 14522876 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 ||||| ||||| | ||||| |||||||| ||||| | ||| ||||||||||| Sbjct 14522875 CCCCTCCTCCCTCTCTGTAAAGCCTAGGTTGTCCAAGAAGTCACGGGACCCGTTGGCGTC 14522816 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||||||||| || || ||||| || ||||| |||| ||||| || || Sbjct 14522815 CCAGATCTTCACTCCTTTCTCTGACAGCTCCTTGGCATTTGTTGATCC 14522768 Score = 120 bits (132), Expect = 2e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || || | ||| || |||||||| ||||| || | |||||||||||||| || || Sbjct 14523819 AGTCCTGTAATGTGTGCAATCATGTAGGTGAGAAGTGCATAGCTGGCGATGTTGAAAGGC 14523760 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 ||||| || |||||||| | || | |||||| |||||||| || ||||| |||| || Sbjct 14523759 ACCCCCAGACCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTTGCAG 14523700 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 || || |||||||| | || |||||| || || | ||||| Sbjct 14523699 ACATAGAACTGACAGAGGGCGTGGCAGGGGGGCAACGCCAT 14523659 >seq4 Length=33259606 Score = 100 bits (110), Expect = 2e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 112107 CTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 112166 ||||||||||||||| | ||| |||||| || |||| || || ||||| || ||||| || Sbjct 4569947 CTCCCTGCTGAGGACGATGTTGATCCTGCCTTTCAGTGGCCTGTTCTTCTCTGGGATTGA 4570006 Query 112167 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 |||||| ||||| || ||||| | |||||| |||| | ||||| Sbjct 4570007 GAACCAGGTCTTCCTGCCCATGACCACCACATTCTTCCTGCCT 4570049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617475499325