Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq10 360 4e-94 seq7 111 3e-19 seq3 93.3 8e-14 >seq10 Length=32721116 Score = 360 bits (398), Expect = 4e-94 Identities = 865/1295 (67%), Gaps = 38/1295 (3%) Strand=Plus/Plus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTC-AGGGC 221424 || ||||||| ||||||||| ||| | | |||| | |||| | || || ||||| Sbjct 10503749 CCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCA-GCTGGCCTCCAGGGC 10503807 Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484 ||||||||||||||||| |||||| ||||||| || || |||||| ||| Sbjct 10503808 GGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAA 10503867 Query 221485 GGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCT 221544 || |||| || ||| |||||||||| ||||| || ||||| ||||| ||||| Sbjct 10503868 CGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCT 10503927 Query 221545 GTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATT 221604 ||| | | ||||||||| | ||||| || || || || |||||| |||||| | || Sbjct 10503928 GTGGCGCTTGTTGGAAGTCTCAGCTTCAGGAACCGGGTAGTAGTTGATGTCGATGATCTT 10503987 Query 221605 GTTGAGGTT---CAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACAC 221661 ||||||||| || | || || || || || |||||||| | | ||| Sbjct 10503988 GTTGAGGTTTTTCACA---ATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAA--- 10504041 Query 221662 CAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTT 221721 | || | | | |||| | ||| ||| ||||| | | ||||||||| Sbjct 10504042 --AGTCCGCTCTGGCGTGACGT------ACAT----GTTGAGGGCGATGGAGGCCAGGTT 10504089 Query 221722 ACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCA 221781 || |||||||||||||||||| |||| |||| | | ||| || |||||||||||||| Sbjct 10504090 GCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCA 10504149 Query 221782 CTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT 221841 ||||||||| ||||||| | || || ||| || ||| |||||||||||||||||| Sbjct 10504150 CTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCAT 10504209 Query 221842 AAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGC 221900 |||| || || || ||| | | | | || || |||||| | ||| || Sbjct 10504210 GTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTG-CTGCGCCT 10504268 Query 221901 TCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACT 221960 ||||| |||||| ||| || || ||| ||||| ||| |||||| | || |||| Sbjct 10504269 TCACCACCCTCTTCACTCTCCCTTC---CTTCTCATATTTGGTGTAGAGCTTCTCGAACT 10504325 Query 221961 TTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCT 222020 || || | ||||||||| || |||||| | ||||||||||| ||||| || Sbjct 10504326 CCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCT 10504385 Query 222021 TGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTC 222080 |||| | || |||| |||||| ||||| |||||||||| || | || || |||| Sbjct 10504386 GGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTC 10504445 Query 222081 TGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAG 222140 ||| | |||||||||| || |||| ||| |||| |||| || || || | ||| Sbjct 10504446 TGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGA 10504505 Query 222141 CGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCA 222200 |||||| |||||||| || | ||| | || ||||||| ||||||||| ||||| || | Sbjct 10504506 AGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGA 10504565 Query 222201 CCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGT 222260 | || | |||| | | | || |||| |||| |||||||| |||| Sbjct 10504566 CGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGT 10504625 Query 222261 TGGTGCCCTTAATGTACGCACCGCCGGCCCTC--AGGTTACTGGCAGACATGCCGATACC 222318 ||||||| ||||| || | ||| | || | | || | | || ||| || || Sbjct 10504626 TGGTGCCTGCGATGTA-GCTTC-CCGTCGATCGGATGCAGCTCACCGCCACGCCTATCCC 10504683 Query 222319 ACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGA 222378 || ||| || || || | || || ||| || ||||| |||||| || || Sbjct 10504684 GCCAGCGGACTTGGAAATGAGCGCACACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCT 10504743 Query 222379 GTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTT 222438 ||| ||||| | | ||||| || ||| |||| ||| | | ||| | |||||| Sbjct 10504744 GTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTT 10504803 Query 222439 AAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTAC 222498 || || || ||| |||||| || || | | |||| || | ||| ||||| || Sbjct 10504804 GAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGAC 10504863 Query 222499 GACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGG 222558 | | | |||||| |||||||||| | | |||||| ||||| ||| || Sbjct 10504864 GGCGGCGTCGATGTCTCGCCCGTGAATCCCAACCGACACCCTCATGAGCATGTGCTGCGG 10504923 Query 222559 CCTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAA 222615 | || |||| ||| | || || |||||||| || |||||||||||||| Sbjct 10504924 TCGCTCGGCCAC-TTTCCCGTTGATCT--TCAGCAGGTAGGAACGCTCCAGAGTCTTGAA 10504980 Query 222616 CCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAA 222650 || ||| ||||| | ||| |||||| ||| || Sbjct 10504981 GCCGAAGAAGTTGTAGGAAAAATCTCTGTCGTAAA 10505015 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || || | ||| ||| |||||| | ||| ||| || | Sbjct 10503457 CATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGATCCTTGAGGAGGTGAGGGTTGACAAT 10503516 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 ||||| ||||| || |||||||| | ||| | ||| ||| ||| |||||| Sbjct 10503517 CTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGA 10503576 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| ||| ||||||||||| |||| |||||| || Sbjct 10503577 CTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATGGGCGCCAGCAGCAGGCT 10503636 Query 221245 GTT 221247 ||| Sbjct 10503637 GTT 10503639 >seq7 Length=23593460 Score = 111 bits (122), Expect = 3e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||| || ||||||||||| ||||| ||| |||||||| || |||||||||| Sbjct 3931200 TGGTGGCCTTCGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCTTCT 3931259 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || |||||||| ||| ||| |||||||||||||||| | | Sbjct 3931260 GGCTGAAGAAGAGAGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTCATCAGCCGAG 3931319 Query 26003 ACGAGG 26008 |||||| Sbjct 3931320 ACGAGG 3931325 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 |||||||||||||| ||||| ||||| || |||| |||||||||||||||||||| ||| Sbjct 3932082 AACCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAG 3932141 Query 26305 AGGGTCGGCGACTATCA 26321 ||||||| || || || Sbjct 3932142 CGGGTCGGGGAGTACCA 3932158 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 |||||||||||||| ||||| ||||| || |||| |||||||||||||||||||| ||| Sbjct 3939143 AACCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAG 3939084 Query 26305 AGGGTCGGCGACTATCA 26321 ||||||| || || || Sbjct 3939083 CGGGTCGGGGAGTACCA 3939067 >seq3 Length=27041879 Score = 93.3 bits (102), Expect = 8e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 || ||| |||||||| || ||||||| || || || ||||||| | |||||| || Sbjct 15256320 CTTCATAAAGAGGTCTGGAATCCACAAGGCAAAGAACAGGTCTCTGGCTCTCTGCTCTTC 15256379 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 || |||| ||| |||| |||||||||||||| | |||||| |||||||||||||| Sbjct 15256380 TTTACCCGTGTTCTTCTTCAGCTCCAAAAACTCAAACACGTCAGCATGCCACGGCTCCAG 15256439 Query 222157 ATAGAC 222162 || || Sbjct 15256440 GTACAC 15256445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844509736000