Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1 161 6e-34 seq18 96.9 2e-14 seq3 91.5 1e-12 seq23 87.8 1e-11 >seq1 Length=29966060 Score = 161 bits (178), Expect = 6e-34 Identities = 368/552 (67%), Gaps = 4/552 (1%) Strand=Plus/Plus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 |||| | ||||| || ||| | || || || ||| |||||| | || | || ||| Sbjct 12094088 GAATATCCATTGGCATCGATCTGGGCACCACCTACTCTTGTGTCGGGGTCTTCCAGCATG 12094147 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | ||||| ||||| || |||||||| ||||| || || ||||| || || || | | Sbjct 12094148 GAAAAGTGGAAATTATCGCCAATGATCAAGGCAACAGGACAACTCCCAGCTACGTGGCCT 12094207 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 |||| || || || || ||||| |||||||| || | |||| ||| || || Sbjct 12094208 TTACCGACACAGAGAGGCTCATTGGGGATGCTGCCAAGAACCAAGTTGCCATGAACCCCA 12094267 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || || |||||||| ||| | | ||||| | | |||||||| |||| Sbjct 12094268 CCAACACGATCTTTGATGCCAAACGGCTCATTGGAAGAAGGTTTGATGACCTGGTGGTCC 12094327 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT-- 474621 | ||||| ||| | ||||| || |||||||| || | || || || | | Sbjct 12094328 AGTCTGACATGAAACTCTGGCCCTTCAAGGTGATCAACGACAACGGAAAGCCCAAAGTCC 12094387 Query 474622 AGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 || | |||| | ||| |||| ||| ||| | || ||| | ||||| || ||||| Sbjct 12094388 AGGTGGAATATAA--AGGAGAAATTAAGACATTCTGTCCTGAAGAGATTTCCTCGATGGT 12094445 Query 474682 TTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGT 474741 | | ||||||| | ||| ||| | | ||| ||||| || | |||| || Sbjct 12094446 CCTGGTTAAAATGAGAGAAATAGCGGAGGCCTTTCTGGGACAGAGGGTGTCGAATGCGGT 12094505 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 || || || ||||| || ||||||||||| ||| | ||||| || || ||||| ||| Sbjct 12094506 CATCACAGTGCCAGCTTACTTTAATGATTCCCAAAGGCAAGCCACAAAGGATGCTGGAGT 12094565 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 || | || || |||||| | || || || ||||| || ||||| || || |||| || Sbjct 12094566 GATCTCCGGACTAAATGTTCTCCGCATCATAAATGAGCCGACAGCTGCAGCCATTGCCTA 12094625 Query 474862 TGGTCTTGATAA 474873 || |||||||| Sbjct 12094626 CGGCCTTGATAA 12094637 Score = 120 bits (132), Expect = 2e-21 Identities = 412/633 (65%), Gaps = 16/633 (3%) Strand=Plus/Plus Query 475548 TTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAAT 475607 |||| |||| || || ||||| || ||||| | | | || || |||||||| | Sbjct 12094922 TTGAGATTGACTCACTCTTTGAGGGCATTGACTTTTACACCTCAATCACAAGGGCACGCT 12094981 Query 475608 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCA 475667 | || || | || || |||||||| |||| | || || ||||| | | || Sbjct 12094982 TCGAGGAGCTCAACTCAGACCTCTTTAGGGGAACACTGGAGCCAGTTGAGAAGGCCCTAC 12095041 Query 475668 GAGATTCTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 |||| |||| || || ||||| |||| |||| ||| |||| || || || || || ||| Sbjct 12095042 AAGATGCTAAGCTGGATAAATC-CAAGATCCACGAAGTTGTCCTAGTTGGTGGCTCTACA 12095100 Query 475727 AGAATTCCAAAAATAAGAGAAATGCT--TTCATCATATTTT-AATGGTAAAAAGTTAAAT 475783 ||||| || ||||| ||| ||| | || | | || ||||||| | | |||| Sbjct 12095101 AGAATCCCCAAAATCC---AAAAGCTCCTGCAGGACTTCTTCAATGGTAGAGAACTAAAC 12095157 Query 475784 GAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTA 475843 | || | || ||||||||||| || || ||||| || || ||||| || ||||| | Sbjct 12095158 AAGAGCATCAACCCTGATGAAGCGGTGGCCTATGGTGCAGCAGTCCAGGCTGCTATCCTC 12095217 Query 475844 TCAGGTCAATCAGACGAGAAACTAAATAATATT--GTACTTGTTGACGTAACTCCACTTT 475901 ||| | || ||||| | || ||| | || | || || | || | | Sbjct 12095218 ATGGGTGA--CACCTCAGAAAATGTCCAAGATTTACTGCTCCTGGATGTGGCACCCTTGT 12095275 Query 475902 CATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTA 475961 | | || |||| |||| || || ||||||| |||||| | |||| || | | Sbjct 12095276 CCCTGGGCATTGAGACAGCCGGTGGCGTTATGACCCCTCTTATCAAGCGAAACACCACCA 12095335 Query 475962 TCCCATGCAA--AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAAC 476019 |||| || | | ||| | | || ||||| || || ||||| || || || Sbjct 12095336 TCCCCACAAAGCAGACTCAGA--TCTTCTCCACATACTCAGATAACCAGCCAGGAGTCCT 12095393 Query 476020 CATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTT 476079 || || ||| ||||||||| ||| | || || || || || || || | || Sbjct 12095394 GATTCAGGTCTATGAAGGTGAGAGAGCCATGACAAAGGACAACAATCTCCTGGGGAAGTT 12095453 Query 476080 TAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGA 476139 | | || ||| ||||||||||||||||||| || || || || |||||||| ||||| Sbjct 12095454 TGAGCTCTCGGGTCTTCCTCCTGCTCCCAGAGGCGTGCCACAGATCGAAGTTACCTTTGA 12095513 Query 476140 TATTGATGCAAATGGTATTCTTAATGTTACTGC 476172 ||| || || || || || || || || |||| Sbjct 12095514 TATCGACGCCAACGGCATCCTAAACGTGTCTGC 12095546 >seq18 Length=29603586 Score = 96.9 bits (106), Expect = 2e-14 Identities = 105/136 (77%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG--AACTTTTAATCTTGAAG 476090 ||||| ||||| | || ||||||||||| | ||||| || ||| ||| | | Sbjct 16849573 GAAGGGGAAAGGGCCATGACCAAAGATAATAATAT-CTTGGGGAAATTTGAAT-TAACTG 16849516 Query 476091 GTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAA 476150 ||||||| ||||||||||||||||| ||||| || ||||| || ||||| |||||||| | Sbjct 16849515 GTATTCCGCCTGCTCCCAGAGGAGTCCCTCAGATCGAAGTGACCTTTGACATTGATGCCA 16849456 Query 476151 ATGGTATTCTTAATGT 476166 | || ||||| ||||| Sbjct 16849455 ACGGCATTCTCAATGT 16849440 Score = 89.7 bits (98), Expect = 3e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| | || |||||| | || || ||||| ||||| | | | | || |||| ||| Sbjct 16852447 GCAGTAGGCATTGATCTGGGTACCACTTATTCATGTGTGGGTATCTTCCAGCATGGCAAA 16852388 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || ||||||||||||||||| || ||||| |||||| ||||| | || || Sbjct 16852387 GTGGAGATCATTGCCAATGACCAAGGGAACAGAACCACACCAAGTTATGTGGCCTTCACA 16852328 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAA 474480 || || || ||||||||||||||||| || Sbjct 16852327 GACACAGAGAGGCTTATTGGAGATGCTGCCAA 16852296 >seq3 Length=27041879 Score = 91.5 bits (100), Expect = 1e-12 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| |||| || ||| | ||||| || || ||||| | ||| | || |||| ||| Sbjct 26832753 GCAGTTGGAATCGATCTTGGAACCACCTATTCCTGTGTTGGTGTGTTCCAGCATGGCAAA 26832694 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| ||||||||||||||||| || || || ||||| ||||| |||| || Sbjct 26832693 GTTGAAATCATTGCCAATGACCAAGGCAACAGGACCACACCCAGCTATGTGGCTTTCACA 26832634 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || || ||||||||||| || || |||| | ||| || ||| ||| Sbjct 26832633 GATACAGAGAGGCTGATTGGAGATGCAGCCAAGAATCAGGTTGCCATGAACCCTACCAAT 26832574 Query 474509 ACTATTTTTG 474518 || |||||| Sbjct 26832573 ACAGTTTTTG 26832564 Score = 86.0 bits (94), Expect = 4e-11 Identities = 82/103 (80%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 476072 GGAACTTTTAATCTTGA-AGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGT 476130 |||| ||| ||| ||| ||| |||||||||||||| | || ||||| || ||||| || Sbjct 26830848 GGAAGTTTGAAT--TGACAGGAATTCCTCCTGCTCCTCGTGGTGTTCCACAGATTGAGGT 26830791 Query 476131 TACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 ||||| ||||||||||| |||||||| | ||||| ||||| Sbjct 26830790 GACTTTCGATATTGATGCTAATGGTATCATGAATGTCTCTGCT 26830748 >seq23 Length=24361341 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || || || |||||||| || || | || || ||||||||||| ||||| || Sbjct 2609081 ATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTT 2609022 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || ||||||||| || || ||||| |||||| || | || ||||| || Sbjct 2609021 ATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGAT 2608962 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || ||||| || || |||||||| || Sbjct 2608961 AGTCTTCCCAGTGAGGGTTTTCACGAAAATCTG 2608929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178127628700