Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq10 174 2e-38 seq5 91.5 2e-13 seq3 87.8 2e-12 >seq10 Length=32721116 Score = 174 bits (192), Expect = 2e-38 Identities = 958/1503 (64%), Gaps = 66/1503 (4%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||| |||| | | || || |||||| |||||| || | | | Sbjct 10504923 CCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATTCACGGGCGAGACATCGACGCCGCC 10504864 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || |||| | | || ||||| ||||| | || |||||||| Sbjct 10504863 GTCGAGACCTACAACCTCCTGTCGGAGAAGTG-GTTCACCCACGCCTCTCCGACCCTCTT 10504805 Query 75331 CAATGCTGGTACACCAA--GACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 ||| || || || ||| | |||||| |||||||||||||||| |||||| ||||| Sbjct 10504804 CAACGCCGGGAC--CAACCGGCCGCAGCTGTCCAGTTGCTTCCTGCTCGCCATGAAGGAC 10504747 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| ||| | || ||||| | || || | | ||||||||| || || |||| ||| Sbjct 10504746 GACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGTGCGCTCATTTCCAAGTCCGCT 10504687 Query 75449 GGGGGTATTGG---------GATGCACATCC-AT-GATGTGAGAGCCAATAAATCTCGTA 75497 || || || || || ||||| || || | || ||| || ||| | Sbjct 10504686 GGCGGGATAGGCGTGGCGGTGAGCTGCATCCGATCGACGGGA-AGC---TACATCGC--- 10504634 Query 75498 TTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 75557 || || || || | || | || | | || ||||| | || | ||| || Sbjct 10504633 ----AGGCACCAACGGCAACTCCAACGGGTTGGTGCCGATGCTGAGAGTTTACAACAACA 10504578 Query 75558 CAGCGCGCTATGTAAATCAAGCGGGGCGTC-GCAAG------GGGTCCATCGCGGTCTAC 75610 | |||| ||| || | | ||||| | |||| ||| || |||| | ||| Sbjct 10504577 C----CGCTCGGTACGTCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTAC 10504522 Query 75611 TTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAG-TTACGACTCAACCAAGGTGA 75669 |||| |||||||| ||| | | || ||||| ||| | | || ||| ||| | Sbjct 10504521 CTGGAGCCATGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGA-AGAACACAGGAAA 10504463 Query 75670 CGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAA 75729 || ||| | ||||| || || | || ||||||| || ||||| |||||||| Sbjct 10504462 GGAGGAGCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATGAA 10504403 Query 75730 GCGGGT--TGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTC 75787 | | || ||| | || | ||||| | | ||||| | || || || || Sbjct 10504402 GAGAGTGGAGAGCAACCAGG--ACTGGTCCTTGATGTGTCCCAGCGAGTGTCCTGGGCTG 10504345 Query 75788 TCCGA-CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAG 75846 ||| || | ||| |||||||| || |||||||| || ||||| |||| || || Sbjct 10504344 GACGAGTGCTG-GGGAGAGGAGTTCGAGAAGCTCTACACCAAATATGAGAAGGAAGGGAG 10504286 Query 75847 AGCCAATGCGACTGTACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGG 75905 || || | | || || ||| | | | ||| | || || || | || ||||| | Sbjct 10504285 AGTGAA-GAGGGTGGTGAAGGCGCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCG 10504227 Query 75906 AGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGA 75965 | || || || || || ||||| |||||||| ||||| ||| |||||| ||||| ||| Sbjct 10504226 AAACCGGGACCCCCTACATGCTCTACAAGGACGCTTGCAACCGGAAGAGCAACCAGCAGA 10504167 Query 75966 ATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGG 76025 | |||| || |||||| || || || |||||||| | | |||||||| |||| Sbjct 10504166 ACCTGGGCACCATCAAGTGCAGCAACCTCTGCACGGAGGTGGTGGAGTACACCAGCAAGG 10504107 Query 76026 ATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGA 76085 | ||| ||| || ||||| |||| || |||||||| | ||| |||| |||| Sbjct 10504106 ACGAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGAG- 10504048 Query 76086 CTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAA 76145 || ||||| || | | || || |||| ||| | || ||||| || | Sbjct 10504047 --CGGACTTTCGACTTCAAGAAGCTGGCCTCCGTCACCAAGGTAATTGTGAAAAACCTCA 10503990 Query 76146 ACCGAGTCATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGC 76202 || |||| |||| || | || || || ||| ||| | | || || | || Sbjct 10503989 ACAAGATCATCGACATCAACTACTACCCGGTTCCTGAAGCTGAG---ACTTCCAACAAGC 10503933 Query 76203 GACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTG-TGCCGC 76261 | ||||| || || || | || || || ||||| || || | || || || ||| || Sbjct 10503932 GCCACAGGCCGATCGGGATCGGCGTCCAGGGTCTGGCCGACGCCTTCATCCTGATGCGGC 10503873 Query 76262 TACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTAT 76321 || | || || ||||| || | | || | ||||| || ||||| || Sbjct 10503872 -ACCCGTTCGAAAGTCCCGAAGCTCAGCTGCTCAACATCCAGATCTTCGAGACCATCTAC 10503814 Query 76322 CACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTT 76381 ||||| |||||||||| || || || | || | || | || |||| ||||| | Sbjct 10503813 CACGCCGCCCTGGAGGCCAGCTGCGAGCTCGCCGCAGAGCTCGGCCCCTACGAGACGTAC 10503754 Query 76382 GAGGGTTCTCCCGCGTC-CCAAGGG-GTGCTTCAGTTTGATATGTGGGAAGGTGAAACCA 76439 ||||| ||| | |||| |||||| | || |||| || ||||||| || || || Sbjct 10503753 GAGGG--CTCGCCCGTCAGCAAGGGCATCCTCCAGTACGACATGTGGG-AGAAGACGCCG 10503697 Query 76440 AGC-TCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 76498 | | | | |||||| | | || |||||| ||| | | || | | ||| Sbjct 10503696 ACCGACCTTTGGGACTGGAAGCTGCTGAAGGAAAAGATCGGCAAACACGGCGTGAGGAAC 10503637 Query 76499 AGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 76558 || || || |||| || ||||| || ||||||||||| || ||| |||| || || || Sbjct 10503636 AGCCTGCTGCTGGCGCCCATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAG 10503577 Query 76559 TGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTC 76618 | | | || | ||||| | ||||||||| | || || | || ||||| Sbjct 10503576 TCCATCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGAGTTCCAG 10503517 Query 76619 ATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATG 76678 ||||||||| |||||| |||| || || | | || || || ||| | |||| ||| Sbjct 10503516 ATTGTCAACCCTCACCTCCTCAAGGATCTGACGGAGCGCGGCCTGTGGAACGAGGAGATG 10503457 Query 76679 AAG 76681 ||| Sbjct 10503456 AAG 10503454 >seq5 Length=26266306 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCT 65136 ||||| ||| | || ||||| |||||||| || |||||||| || |||||| ||| Sbjct 12374957 GAGCGTCTTGTGGCTTTTGCAGCAGTGGAGGGGATTTTCTTCTCAGGCTCATTCGCTGCT 12374898 Query 65137 ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATT 65196 || || ||| |||||||| | || ||||||||||| || || ||| || ||||| ||| Sbjct 12374897 ATCTACTGGCTGAAGAAGAGAGGCCTCATGCCAGGTCTTACCTACTCCAACGAACTCATT 12374838 Query 65197 TCCCGAGATGAGG 65209 | | ||||||| Sbjct 12374837 AGCAGGGATGAGG 12374825 >seq3 Length=27041879 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 76496 AACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 76555 |||||||| | |||| |||||||| ||||| ||||| || || ||||||||||| ||| Sbjct 15254346 AACAGTCTGCTTTTGGCCCCAATGCCCACAGCTTCCACTGCCCAGATCTTGGGTAACAAT 15254287 Query 76556 GAATGCTTTGAACCATACACAACAAACATCTAC 76588 || | | |||| ||||||||| ||||||||| Sbjct 15254286 GAGTCCATTGAGGCATACACAAGCAACATCTAC 15254254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569413572000