Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq10 163 3e-35 seq3 104 2e-17 seq23 100 3e-16 >seq10 Length=32721116 Score = 163 bits (180), Expect = 3e-35 Identities = 931/1468 (63%), Gaps = 45/1468 (3%) Strand=Plus/Plus Query 138540 GTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGT 138599 ||| |||||| ||||| | | ||| | || |||||||| ||||| ||||| || |||| Sbjct 10503547 GTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGA 10503606 Query 138600 CGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTC 138659 || || |||||| ||||| || || |||| | ||||| ||| ||| Sbjct 10503607 GGCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTC 10503666 Query 138660 CTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAA 138719 ||| ||| | ||||||||| | ||| | || | || | |||||| |||||||| | Sbjct 10503667 CTTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAG 10503726 Query 138720 CATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAA 138779 || ||| || |||| ||| ||||||| ||||| || | |||| || | Sbjct 10503727 GATGCCCTTGCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAG 10503786 Query 138780 CTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAA 138839 |||| ||| ||||| || || | | ||| || || ||| ||||| ||||||| Sbjct 10503787 CTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAG 10503846 Query 138840 TCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTG 138899 | || |||| || ||| |||| || | || |||| ||||||||||| || || Sbjct 10503847 CTGAGCTTCGGGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTG 10503906 Query 138900 CACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTC---GATAGG 138956 ||||| | |||| || | |||||| || || | | | ||||| | || Sbjct 10503907 GACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAG---TCTCAGCTTCAGGAACCGG 10503963 Query 138957 ATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGT--CGTATGC 139014 || ||||| | |||||||| ||||| | ||| ||| | ||||| || || | || Sbjct 10503964 GTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACAATTACCTTGGTGACGGAGGC 10504023 Query 139015 TTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTG 139074 || | || ||| | || || | || ||| ||||| ||| ||||| Sbjct 10504024 CAGCTTC--TTGAAGTCGAAAGT--CCGCTCTGGCGT----GACGT--ACA----TGTTG 10504069 Query 139075 ACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATT 139134 | || ||||| | |||||| || ||||| ||||| | | |||| || || | Sbjct 10504070 AGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACC 10504129 Query 139135 TCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTA 139194 || | || | || || |||||||| || || | || || || ||||| || ||||| Sbjct 10504130 TCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTG 10504189 Query 139195 CAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAAT 139254 ||||| || ||||| ||||| || || || || ||||| || | ||| || ||| Sbjct 10504190 CAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCG 10504249 Query 139255 TTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTT--CGTCGCGCTCGTACTTTT 139312 | | | | | || | | || | | | | | | || ||| || || Sbjct 10504250 TACCAGAGCTGCTGCGCCTTCA--CCACCCTCTTCACTCTCCCTTCCTTCTCATATTTGG 10504307 Query 139313 CGTAGAGTTCGTCGAA-TCGT-TCACC-GTAGGCGTCAGAAAGATCGCGACACTTGTCAG 139369 |||||| | ||||| || | || || | | |||| || | |||||| | | Sbjct 10504308 TGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTC---CAGCCCAGGACACTCGCTGG 10504364 Query 139370 GACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCC 139429 ||||||| | ||||| | ||| || || | | |||||||||| || || |||| Sbjct 10504365 GACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCC 10504424 Query 139430 ACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGT 139489 |||| ||| | | | || | || ||| || ||| || |||| |||| | Sbjct 10504425 ACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCT 10504484 Query 139490 TAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC---TT 139546 ||||| || || ||||| ||||||||| ||||| || ||||| | || || | Sbjct 10504485 CCAGGAAGTCGAACACGTCGAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTC 10504544 Query 139547 TCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCT 139606 || ||||| || || ||||||| || | | || ||| | || | || ||||||| Sbjct 10504545 TCTTGTTGCCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCA 10504604 Query 139607 CCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCG-AGCTCGGACGTCA 139665 ||| ||| | | | |||||||||| |||| || | || | ||||| | || Sbjct 10504605 CCAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCT-TCCCGTCGATCGGATG-CA 10504662 Query 139666 TGT-ACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-AATG 139723 | || | ||| || ||||| | | ||||| || | | || | || | | | Sbjct 10504663 GCTCACCGCCACGCCTATCCCGCCAGCGGACTTGGAAATGAGCGCACACT-GCTTCAGGG 10504721 Query 139724 TCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTT 139783 | ||||| || ||| ||||||||||||| ||| | || ||| ||||| || || | Sbjct 10504722 TGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCT 10504781 Query 139784 GCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCG 139843 |||| | || || ||||| || || || ||| ||||| |||||| | | || Sbjct 10504782 GCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCG 10504841 Query 139844 ACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGA 139903 ||| | | ||| || |||| |||| | || || | ||||| || || || || | Sbjct 10504842 ACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGAATCCCAACCGACA 10504901 Query 139904 CTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATA-- 139961 | | ||| ||||| || || || |||||||| || | ||| || ||| || Sbjct 10504902 CCCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGG 10504961 Query 139962 ACCGTTCTCTAGGGTCTTGTAGCCAAAG 139989 | || ||| || |||||| |||| ||| Sbjct 10504962 AACG--CTCCAGAGTCTTGAAGCCGAAG 10504987 >seq3 Length=27041879 Score = 104 bits (114), Expect = 2e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || ||||| ||||| || || || || || || ||| Sbjct 11047078 GATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAG 11047019 Query 24763 CGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 || || | || |||| ||| | || |||||| || || || || || || || || | Sbjct 11047018 TGATACCATTGAGAACGTTAAGGCCAA-GATCCAGGATAAGGAGGGCATCCCCCCTGACC 11046960 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATA 24881 | || | ||||||||||||| || |||||||| ||| | | | |||| || || | Sbjct 11046959 AGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACA 11046900 Query 24882 ACATTCAAAAGGAATCGACACTACACTTG 24910 |||| || ||||| || || || ||| || Sbjct 11046899 ACATCCAGAAGGAGTCCACCCTTCACCTG 11046871 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || ||| ||| | Sbjct 11045066 ATGCAGATCTTCGTAAAGACCCTCACTGGCAAGACAATCACCCTGGAGGTGGAACCCAGC 11045007 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || | ||| ||||| || ||||| || || || || || || Sbjct 11045006 GACACCATTGAGAACGTCAAGGCCAAA-ATCCAGGATAAAGAGGGCATCCCCCCTGACCA 11044948 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | |||||||| || || |||||||| ||| | | | |||| || || || Sbjct 11044947 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 11044888 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| || || ||||| || || ||| Sbjct 11044887 CATCCAGAAAGAATCCACCCTCCAC 11044863 >seq23 Length=24361341 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || || || || ||||| || || || || || ||| Sbjct 2608925 GATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACTATCACCCTGGAGGTGGAGCCCAG 2608984 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || |||||| || || |||||||| || ||||| || || Sbjct 2608985 TGATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCA 2609044 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || ||||||||||| ||| | | | |||| || || || Sbjct 2609045 GCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAA 2609104 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 | | || ||||| || || || ||| |||| | || || | ||||| Sbjct 2609105 CGTCCAGAAGGAGTCCACCCTCCACCTGGTTCTCCGCCTGAGGGGAGG 2609152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897459407000