Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq3 140 2e-28 seq23 123 2e-23 >seq3 Length=27041879 Score = 140 bits (154), Expect = 2e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 34771 CAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAG 34830 |||||||| |||| ||||||||| ||||| ||||| || ||| |||| |||| ||||| Sbjct 11046871 CAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAG 11046930 Query 34831 TTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTAT 34890 ||||||||||| |||||||| | |||||||| | || | |||||||| || | || Sbjct 11046931 CTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGAT 11046990 Query 34891 TTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCC 34950 || || ||| | || | ||| ||| ||| || || | ||| ||||| || || Sbjct 11046991 CTTGGCCTTAACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCC 11047050 Query 34951 CGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| || |||||||||||||| Sbjct 11047051 GGTGAGGGTTTTCACAAAGATCTGCAT 11047077 Score = 118 bits (130), Expect = 7e-22 Identities = 170/240 (71%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 34743 AATCATTTCCT-----CCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAAT 34797 |||||||| || ||||||| | || || ||||| | |||| || ||||| || Sbjct 11044827 AATCATTTACTGGCCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGAT 11044886 Query 34798 GTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTG 34857 ||| ||||| || ||| |||| |||| ||||| ||||| || || ||||| || | || Sbjct 11044887 GTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTG 11044946 Query 34858 CTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTC 34917 |||||| | || | ||||| || || | ||||| |||||| | || | || Sbjct 11044947 CTGGTCAGGGGGGATGCCCTCTTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTC 11045006 Query 34918 ATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || || | ||| || ||||| || |||||||||||||| ||||||||||| Sbjct 11045007 GCTGGGTTCCACCTCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCAT 11045066 >seq23 Length=24361341 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34750 TCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGA 34809 ||||||||||| | || |||||||| | |||| ||||||||| | ||| |||||||| Sbjct 2609153 TCCTCCCCTCAGGCGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGA 2609094 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||| |||| |||| ||||| || || || || |||||||| | |||||||| | || Sbjct 2609093 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 2609034 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929 | || || || || | || ||| || ||| | || | ||| ||| ||| || Sbjct 2609033 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 2608974 Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| || ||||| || |||||||| || || || |||||||| Sbjct 2608973 CTCCAGGGTGATAGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 2608926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692700765475