Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq23 89.7 4e-13 seq3 82.4 6e-11 >seq23 Length=24361341 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| ||||| || ||||| | || || || || || ||| | || |||| | Sbjct 2608923 AAGATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACTATCACCCTGGAGGTGGAGCCC 2608982 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 | ||||| | | | || || ||||||| |||||||||||| | || || Sbjct 2608983 AGTGATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGAC 2609042 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||||| || || | ||| || ||||||||||| || | | || || |||||||| Sbjct 2609043 CAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTAC 2609102 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| | || |||||||| || | ||| |||| Sbjct 2609103 AACGTCCAGAAGGAGTCCACCCTCCACCTGGT 2609134 >seq3 Length=27041879 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 107538 ATTTATAA--GAGGTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTA 107595 |||| ||| | ||| || ||||| || ||||| ||||| | || ||||||||||| | Sbjct 11047097 ATTTCTAAAGGTGGTGCAAGATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCA 11047038 Query 107596 CCGTCGAAACGGAGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAG 107655 || | || |||| | | ||||| | | | || || ||||| ||||| | Sbjct 11047037 CCCTGGAGGTGGAGCCCAGTGATACCATTGAGAACGTTAAGGCCAAGATCCAGGATAAGG 11046978 Query 107656 AAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCA 107715 | ||| | ||| || |||||||| || || | ||| || || |||||||| || | | Sbjct 11046977 AGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCC 11046918 Query 107716 AAACAATGGCGGACTACAACATTCAAAAGGAGTCTAC 107752 || || | ||||||||||| || |||||||| || Sbjct 11046917 GCACCCTGTCCGACTACAACATCCAGAAGGAGTCCAC 11046881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876678467225