Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 230 2e-54 seq3 111 1e-18 seq18 86.0 5e-11 >seq1 Length=29966060 Score = 230 bits (254), Expect = 2e-54 Identities = 936/1468 (64%), Gaps = 14/1468 (1%) Strand=Plus/Minus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| || |||||| ||| || || || || ||||| || | |||||| || ||||| || Sbjct 12095556 TTTGTCGACGGCAGACACGTTTAGGATGCCGTTGGCGTCGATATCAAAGGTAACTTCGAT 12095497 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 || || || ||||| ||||||| || | || | | ||| | ||||| ||| Sbjct 12095496 CTGTGGCACGCCTCTGGGAGCAGGAGGAAGACCCGAGAGCTCAAACTTCCCCAGGAGATT 12095437 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 281595 || || || || | || ||||| || | | || || ||| | | || || Sbjct 12095436 GTTGTCCTTTGTCATGGCTCTCTCACCTTCATAGACCTGAATCAGGACTCCTGGCTGGTT 12095377 Query 281596 ATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAA 281654 |||||| || || | || | |||| | | || || || || ||||||| | | Sbjct 12095376 ATCTGAGTATGTGGAGAAGA-TCTGAGTCTGCTTTGTGGGGATGGTGGTGTTTCGCTTGA 12095318 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 ||| | |||||||| ||||| ||||| || | || || || | || | ||||| | Sbjct 12095317 TAAGAGGGGTCATAACGCCACCGGCTGTCTCAATGCCCAGGGACAAGGGTGCCACATCCA 12095258 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774 || | | || ||| | ||||| || | ||| | || ||||| || || | | Sbjct 12095257 GGAGCAGTAAATCTTGGACATTTTCTGAGGTGTCACCCATGAGGATAGCAGCCTGGACTG 12095198 Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834 | |||||||| || || ||||||||||| || | | | ||||||| | ||||||||| Sbjct 12095197 CTGCACCATAGGCCACCGCTTCATCAGGGTTGATGCTCTTGTTTAGTTCTCTACCATTGA 12095138 Query 281835 AAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAA 281894 | || | || || | | | || || || | | || || ||||||| |||| Sbjct 12095137 AGAAGTCCTGCAGGAGCTTTTGGATTTTGGGGATTCTTGTAGAGCCACCAACTAGGACAA 12095078 Query 281895 TTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA 281954 ||| || | || ||||||||||| || | ||| || | || ||||| || || | Sbjct 12095077 CTTCGTGGATCTTGGATTTATCCAGCTTAGCATCTTGTAGGGCCTTCTCAACTGGCTCCA 12095018 Query 281955 GACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT 282014 | | ||||| | |||||| || || ||||| || || || || ||| | Sbjct 12095017 GTGTTCCCCTAAAGAGGTCTGAGTTGAGCTCCTCGAAGCGTGCCCTTGT--GATTGAGGT 12094960 Query 282015 -TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGA 282072 || || ||||| || || || | || |||| ||||| | | ||||| || || Sbjct 12094959 GTAAAAGTCAATGCCCTCAAAGAGTGAGTCAATCTCAATGCTTGCCTGAGTGCTGGAGGA 12094900 Query 282073 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTG 282128 | | | || || | ||||| ||||| | ||||| | | ||| | | ||| Sbjct 12094899 CAAGGTCCTCTTTGCTCTCTCACAAGCTGTGCGCAGTCTCCTCACTGCTCTCTTGTTCTG 12094840 Query 282129 ATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGAC 282188 |||| || | || | ||||| || || || || ||| | | || | | Sbjct 12094839 GCTGATG----TCCTTCTTGTGCTTTCTTTTAAACTCCTCCACAAAGTGGCTGACCATTC 12094784 Query 282189 GATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA 282248 | || |||||||| || || || | | || | || | || | | | || | || | Sbjct 12094783 GGTTGTCAAAATCCTCTCCGCCGAGGTGTGTGTCCCCAGCTGTGGATTTCACCTCAAATA 12094724 Query 282249 GTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAA 282308 |||||| |||| | || | | || ||| || || ||||| | |||||| || | Sbjct 12094723 TTCCATCCTCAATGGTCAGGATGGACACGTCAAAAGTGCCTCCACCAAGATCAAAGATGA 12094664 Query 282309 GTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 | ||||| ||| || | ||||||||| || || |||| || ||||| || | Sbjct 12094663 GGACATTGCGCTCTCCTCTTTTGCCTTTATCAAGGCCGTAGGCAATGGCTGCAGCTGTCG 12094604 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 | ||||| || || | | |||||| || || | || ||| ||||| || ||||||| Sbjct 12094603 GCTCATTTATGATGCGGAGAACATTTAGTCCGGAGATCACTCCAGCATCCTTTGTGGCTT 12094544 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTC 282488 | ||||| ||||| ||||| || || || || || || || |||| | || | || Sbjct 12094543 GCCTTTGGGAATCATTAAAGTAAGCTGGCACTGTGATGACCGCATTCGACACCCTCTGTC 12094484 Query 282489 CAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG 282548 | | | | || ||| ||| | |||||||| | | ||| || ||||| | ||| | Sbjct 12094483 CCAGAAAGGCCTCCGCTATTTCTCTCATTTTAACCAGGACCATCGAGGAAATCTCTTCAG 12094424 Query 282549 GAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACAT 282608 || | || ||| ||| || |||| || | | | || || | | Sbjct 12094423 GACAGAATGTCTTAATTTCTCCTTTATATTCCACCTGGACTTTGGGCTTTCCGTTGTCGT 12094364 Query 282609 TAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTC 282668 | || || || || ||||| |||||| || || || || |||||| ||| || Sbjct 12094363 TGATCACCTTGAAGGGCCAGAGTTTCATGTCAGACTGGACCACCAGGTCATCAAACCTTC 12094304 Query 282669 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATT 282728 | ||||| | ||||| |||||||| || || ||||| || || | ||| |||| | | Sbjct 12094303 TTCCAATGAGCCGTTTGGCATCAAAGATCGTGTTGGTGGGGTTCATGGCAACTTGGTTCT 12094244 Query 282729 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 282788 |||| ||||| ||||| || ||||| || ||||| | || || |||||||| | Sbjct 12094243 TGGCAGCATCCCCAATGAGCCTCTCTGTGTCGGTAAAGGCCACGTAGCTGGGAGTTGTCC 12094184 Query 282789 GATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAAC 282848 || ||||||||||| || |||||||| ||||| |||| || | || || |||||| Sbjct 12094183 TGTTGCCTTGATCATTGGCGATAATTTCCACTTTTCCATGCTGGAAGACCCCGACACAAG 12094124 Query 282849 TAAAAGTTGTTCCTAAATCAATACCAAT 282876 | || || || | ||| || ||||| Sbjct 12094123 AGTAGGTGGTGCCCAGATCGATGCCAAT 12094096 >seq3 Length=27041879 Score = 111 bits (122), Expect = 1e-18 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| |||||||| || || | ||| | |||| |||||||||||||||||||| Sbjct 26832564 CAAAAACTGTATTGGTAGGGTTCATGGCAACCTGATTCTTGGCTGCATCTCCAATCAGCC 26832623 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||| ||||| || | ||||| || || || | || ||||| ||||| |||| Sbjct 26832624 TCTCTGTATCTGTGAAAGCCACATAGCTGGGTGTGGTCCTGTTGCCTTGGTCATTGGCAA 26832683 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||||||||| |||| || | ||||| ||||| | | || ||||| | ||| | Sbjct 26832684 TGATTTCAACTTTGCCATGCTGGAACACACCAACACAGGAATAGGTGGTTCCAAGATCGA 26832743 Query 282870 TACCAA 282875 | |||| Sbjct 26832744 TTCCAA 26832749 >seq18 Length=29603586 Score = 86.0 bits (94), Expect = 5e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 |||||| ||||| || |||||||| | ||||| || ||||| || |||||||| ||||| Sbjct 16849439 CACATTGAGAATGCCGTTGGCATCAATGTCAAAGGTCACTTCGATCTGAGGGACTCCTCT 16849498 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 281547 ||||||| || || || || | |||| | |||| ||||||||||||| || Sbjct 16849499 GGGAGCAGGCGGAATACCAGTTAATTCAAATTTCCCCAAGATATTATTATCTTTGGT 16849555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740629172605650