Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq10 316 2e-81 seq3 131 2e-25 seq23 113 4e-20 >seq10 Length=32721116 Score = 316 bits (350), Expect = 2e-81 Identities = 992/1522 (65%), Gaps = 42/1522 (3%) Strand=Plus/Plus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 || || | ||| ||||| |||| ||||| | || || | |||||| || ||| Sbjct 10503509 TTGACAATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCC 10503568 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 || | |||||||||||||||| ||||| ||||| | |||||||||||| ||| | | Sbjct 10503569 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATGGGCGCCAGC 10503628 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAG 148439 ||||| ||| | || ||| | || || || |||||| | ||||||||| Sbjct 10503629 AGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTTCCAGTCCCAA 10503688 Query 148440 AGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTG 148499 || | ||| ||| | ||||||||||||||| || ||||| ||| |||| | Sbjct 10503689 AGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAG 10503748 Query 148500 CCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCG 148559 |||||||||| ||| || ||| || | || || || |||||||| ||||| || ||| Sbjct 10503749 CCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCG 10503808 Query 148560 CCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCG---CTTTCG 148616 ||| ||| || |||||| || || ||||||||||| || ||| |||||| Sbjct 10503809 GCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGC---TTCGGGACTTTCG 10503865 Query 148617 TACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGC 148676 |||| |||| | | | || |||||||| || ||||| ||||| | || || ||| Sbjct 10503866 AACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGC 10503925 Query 148677 CGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG-AGCGGATAGTGGTTGCGGTCGATGAT 148735 | ||| ||||||| || | | || | | ||| |||| |||| ||||||||| Sbjct 10503926 CTGTGGCGCTTGTTGGA-AGTCTCAGCTTCAGGAACCGGGTAGTAGTTGATGTCGATGAT 10503984 Query 148736 CTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGTACTT 148795 ||||| || || ||| | ||||| || | | |||| | || ||| | | Sbjct 10503985 CTTGTTGAGGTTTTTCACAATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGT 10504044 Query 148796 GTCATCT------ACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGT 148849 ||| ||| | ||| ||| | |||||| ||||| || ||||| |||||| Sbjct 10504045 CCGCTCTGGCGTGACG-TACAT--GTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCAC 10504101 Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||| ||| | | ||||||| || | ||| | ||| || |||||||| ||||| ||| Sbjct 10504102 CTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCC 10504161 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969 || ||||| || |||||||| | |||||| ||||||||||| |||||||| || || Sbjct 10504162 CAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCC 10504221 Query 148970 AGTTTCCACCTGCGTTTCCACTATGAACCGATGC--AGGTCCTGCGCGCGCACTTGCTGC 149027 ||||| ||| | || | ||| || | || | |||||| ||| | | Sbjct 10504222 GGTTTCGGTCTGGGACTCGATGATG--GCGTACCAGAGCTGCTGCGCCTTCACCACCCTC 10504279 Query 149028 TCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAA 149087 | | || |||| ||| ||| || || ||| ||||||| |||| || |||| Sbjct 10504280 TTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCAC 10504339 Query 149088 TCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACG 149147 ||||| || || || |||| | || ||||| | ||||| | || | ||| Sbjct 10504340 TCGTCCAGCCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACT 10504399 Query 149148 CGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGC--GCGCCTTGCAGT 149205 | |||||| ||||| || || | ||| | ||||| | ||||| | || | ||| | Sbjct 10504400 CTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGC--T 10504457 Query 149206 CTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCT 149265 | || || |||| ||| | || | | ||| | ||| |||||| |||| Sbjct 10504458 CCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCATGGCT 10504517 Query 149266 CAATGTACACCGCGAGCGCGCC------CTTGCGCTTGCCGCCCTGGTCGACGTGGCGCA 149319 | | ||||| |||| || || |||| ||||||||||||||||||| || Sbjct 10504518 CCAGGTACATGGCGAAGGCCCCGGGTCTCTTG---TTGCCGCCCTGGTCGACGTACCGAG 10504574 Query 149320 CCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGC 149379 | ||||||| | |||| | ||| || | | || ||| ||||||| || Sbjct 10504575 CGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCTG 10504634 Query 149380 TAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACT 149439 ||| || || || ||| | | ||| ||||| || ||||| || ||| Sbjct 10504635 CGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCTATCCCGCCAGCGGACT 10504694 Query 149440 TTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCA 149499 | || ||| ||| || | || || ||||||||| |||||||||||| ||||| Sbjct 10504695 TGGAAATGAGCGCACACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCA 10504754 Query 149500 TGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGG 149559 ||| ||||| ||||| | ||| ||||| || ||||| ||| | ||| | Sbjct 10504755 TGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCG 10504814 Query 149560 GGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCA 149619 | |||||| || || | |||| || | | ||| | ||||| || ||| | Sbjct 10504815 GAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGA 10504874 Query 149620 TGTCATCG-CCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCC 149678 |||| ||| || || || || | | || | ||| ||||| |||||||||||||| ||| Sbjct 10504875 TGTC-TCGCCCGTGAATCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCGCTCGGCC 10504933 Query 149679 ACTTT---GTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTAC 149735 ||||| ||| || || |||| |||| || || |||||| |||| ||| | Sbjct 10504934 ACTTTCCCGTT---GATCTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAAGAAG 10504990 Query 149736 TTGTAGTCAAAGTCGCGGCCGT 149757 |||||| ||| || | | ||| Sbjct 10504991 TTGTAGGAAAAATCTCTGTCGT 10505012 >seq3 Length=27041879 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| |||||||| || ||||| ||| || ||| | | | || || |||||||||| Sbjct 11044869 GGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 11044927 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || |||||||| || || || ||| || || Sbjct 11044928 CAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATTTTGGCCT 11044987 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| |||||| |||| ||||| || | ||||| || ||||| || || | Sbjct 11044988 TGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATTGTCTTGCCAGTGAGGG 11045047 Query 133642 TTTTTACGAAAATCTGCAT 133660 | |||||||| |||||||| Sbjct 11045048 TCTTTACGAAGATCTGCAT 11045066 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| | | | || || |||||||| | Sbjct 11046880 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTTC 11046938 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || |||||||| ||||| || |||||| || Sbjct 11046939 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCT 11046998 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| || || |||||||||| || | ||||| |||||||||||| || | Sbjct 11046999 TAACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCGGTGAGGG 11047058 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || |||||||| Sbjct 11047059 TTTTCACAAAGATCTGCAT 11047077 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||| || || ||||| | ||| ||||||||| | ||||| ||||| || | || | Sbjct 15255860 TGTATTCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGT 15255919 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 || |||| |||||||| ||||||||||| ||||||||||| Sbjct 15255920 TGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGG 15255959 >seq23 Length=24361341 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| | ||||| || || ||| | | | || || ||||| |||| Sbjct 2609123 GGTGGACTCCTTCTGGACGTTGTAGTCCGACAGGGTGCGGCCA-TCTTCCAGCTGTTTGC 2609065 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| ||||| |||||||| || || |||||| || Sbjct 2609064 CAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGAATCTTTGCCT 2609005 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| || || |||||||||| || | ||||| || || || || || | Sbjct 2609004 TCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATAGTCTTCCCAGTGAGGG 2608945 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| |||||||||||||| Sbjct 2608944 TTTTCACGAAAATCTGCAT 2608926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420648931000