Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq12 107 2e-18 >seq12 Length=29398440 Score = 107 bits (118), Expect = 2e-18 Identities = 226/332 (68%), Gaps = 4/332 (1%) Strand=Plus/Minus Query 162642 CACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTT 162701 ||||||||| ||||| |||| ||||||||| || || ||| ||| | || ||| | Sbjct 9204026 CACCATCTCCCTGTTGGTTTTAATGGGAAAGTCTGTCCCACAGGTATTCAAAAGGTATCT 9203967 Query 162702 CCACTTAACG-CTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 ||||| ||| | |||| | |||||| | | ||||||||||| ||||| || | Sbjct 9203966 CCACTGAACTTCAGAGTGCAG-CAGATCTTTCATGCAGTTCAGATCTGCCTGTACTCTGG 9203908 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || ||||| || || || || || |||| ||||| |||||| || || | Sbjct 9203907 ACCATGAAGCATACACAACACTTTCTAATTTACTGGCTACAAAAACATTGGGAAAGCAGG 9203848 Query 162821 AAACTATCCCCATCACGGCC-AGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACG 162879 ||||||| | |||| ||| |||| || | | || | ||| || | || || Sbjct 9203847 AAACTATTTTCTTCACAGCCTTGTGAAAAGA-CAGGGAAGACTTCAGGTCAATATGGACA 9203789 Query 162880 CAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTA 162939 ||||| | ||||| || || || || | | | || || |||||||| ||||| Sbjct 9203788 CAGTAGATGTTCTGTGGAGCATAAATAGATTGTAAGAGTCGTTCAAACATCTCAATCTTC 9203729 Query 162940 TGGTGTACCACGATAGAATACGCTATGGGGAA 162971 | ||||| ||| || || || || ||||| || Sbjct 9203728 TCGTGTATCACTATGGAGTATGCAATGGGAAA 9203697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578431819240000