Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq23 100 7e-16 seq3 100 7e-16 >seq23 Length=24361341 Score = 100 bits (110), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| |||| ||||| ||| || | || Sbjct 2608941 AAAACCCTCACTGGGAAGACTATCACCCTGGAGGTGGAGCCCAGTGATACCATTGAGAAC 2609000 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||| || |||||||| ||| || ||| || || || ||||| Sbjct 2609001 GTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGACCAGCAGAGGCTGATCTTT 2609060 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| |||||||||| | || || | || |||||||||||||| ||||| Sbjct 2609061 GCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTACAACGTCCAGAAGGAGTCC 2609120 Query 206365 ACTCTTCACCTTGTT 206379 || || ||||| ||| Sbjct 2609121 ACCCTCCACCTGGTT 2609135 >seq3 Length=27041879 Score = 100 bits (110), Expect = 7e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || ||||| ||||| |||| ||||| ||| Sbjct 11047074 CAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCCAGTGAT 11047015 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || || || ||| || Sbjct 11047014 ACCATTGAGAACGTTAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCCTGACCAGCAG 11046955 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| |||||||||||| |||||||||| | || || |||| |||||| || Sbjct 11046954 AGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATC 11046895 Query 206353 CAGAAAGAGTCTACTCTTCACCT 206375 ||||| ||||| || |||||||| Sbjct 11046894 CAGAAGGAGTCCACCCTTCACCT 11046872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820421448025