Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq10 235 5e-57 seq23 111 1e-19 seq3 84.2 2e-11 >seq10 Length=32721116 Score = 235 bits (260), Expect = 5e-57 Identities = 991/1534 (65%), Gaps = 42/1534 (3%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| | || ||||| || | |||||| | | | || | ||||| ||| | | | Sbjct 10503509 TTGACAATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCC 10503568 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || | ||||| || ||||| | || ||||| |||| || || |||||| ||||| | Sbjct 10503569 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATGGGCGCCAGC 10503628 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA-AGTTTGCCAGTCCCA 147071 | || || | || |||| | ||| || ||||||| || || ||||||||| Sbjct 10503629 AGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTT-CCAGTCCCA 10503687 Query 147072 CA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGA 147129 | ||| | |||||| | |||||||||||||||||| | || ||| |||| Sbjct 10503688 AAGGTCG--GTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGC 10503745 Query 147130 CTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAAT-TCACAGCTTGCCTCGAG 147188 ||| || |||| |||| ||| || ||||| | | || ||||| ||||| || Sbjct 10503746 GAGCCCTCGTACGTCTCGTAGGGGCCGA-GCTCTGCGGCGAGCTCGCAGCTGGCCTCCAG 10503804 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 || | | ||| ||||| ||| ||| || |||| || | ||||| || || Sbjct 10503805 GGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTC 10503864 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 | | || |||| || | ||||| ||||||| |||||||| |||| ||||| || Sbjct 10503865 GAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGG 10503924 Query 147309 TCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAAT 147368 | || | |||| || || | | || |||| |||| || || || Sbjct 10503925 CCTGTGGCGCTTGTTGGAAGTCTCAGCTTCAGGAACCGGGTAGTAGTTGATGTCGATGAT 10503984 Query 147369 CTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGT 147428 |||||||||||| ||| | || || || | | || |||| ||| || |||| Sbjct 10503985 CTTGTTGAGGTTTTTCACAATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGT 10504044 Query 147429 CCCGTCTT-CGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCG 147487 || ||| || |||||| || ||| | |||||| || ||||| |||||||||||| Sbjct 10504045 CCGCTCTGGCGTGACGTAC--AT--GTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCA 10504100 Query 147488 TCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTC 147547 ||| || | | |||||| ||| | || | ||| ||||||||||| || ||| | Sbjct 10504101 CCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGC 10504160 Query 147548 CCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGC 147607 ||| || ||||| ||||| ||||| ||||| ||||| ||| |||||||||| || | Sbjct 10504161 CCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCC 10504220 Query 147608 CGGTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGC--TC-GCACCCGC 147663 |||| ||| || | || | ||| | || || | |||||| || ||||| | Sbjct 10504221 CGGTTTCGGTCTGGGACTCGATGAT-GGCGTACCAGAGCTGCTGCGCCTTCACCACCCTC 10504279 Query 147664 TGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAG 147723 | | | || || || || || ||| | | ||| ||||| || || || Sbjct 10504280 TTC---ACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAG 10504336 Query 147724 CAATCGGCAAGGCCGGGACACT-GATGCGGACACATCAGCGACCACATGTCGTCCGCGTT 147782 || ||| | || || ||||||| | || |||||||||| ||||| | || | Sbjct 10504337 CACTCGTCCAGCCCAGGACACTCGCTG-GGACACATCAAGGACCAGTCCTGGTTGCTCTC 10504395 Query 147783 AACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC--GCGCTTTG 147840 || | ||| ||||| || || | ||||| ||||| | ||| || | || || || Sbjct 10504396 CACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTG 10504455 Query 147841 CAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAG 147900 | ||||| || |||| |||| | || | | | | |||| |||||| Sbjct 10504456 C--TCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCAT 10504513 Query 147901 GGTTCAATGTAGACGGCCAGCGCACC---TTTACGCTTTCCGCCCTGGTCGACATGGCGC 147957 || || | ||| | ||| | || || | | || |||||||||||||| | || Sbjct 10504514 GGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTACCGA 10504573 Query 147958 ACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAA 148017 | ||||||| | || | || ||| || ||| ||| | | ||||||||||| Sbjct 10504574 GCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCT 10504633 Query 148018 TTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTAC 148077 ||| | ||| || | ||| | | ||| ||||| || ||||| || || Sbjct 10504634 GCGATGTAGCTTCCCGTCGATCGGATGCAGCTCACCGCCACGCCTATCCCGCCAGCGGAC 10504693 Query 148078 TTTGATATGGCAGCGCA-ATCGC-CCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTT 148135 || || ||| |||||| | || || || ||||||||| ||||||||||||| | Sbjct 10504694 TTGGAAATG--AGCGCACACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCT 10504751 Query 148136 TGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCG--CGTTCCCGCCG-AGAAAA 148192 | | | | |||| || || ||| ||||| ||| | ||||| || ||| | Sbjct 10504752 TCATGGCGAGCAGGAAGCAACTGGACAGCTGCGG---CCGGTTGGTCCCGGCGTTGAAGA 10504808 Query 148193 GGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGT 148252 |||| ||| ||||| || ||| | || | || | | || ||||| | ||| Sbjct 10504809 GGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGG 10504868 Query 148253 CTTCGATGTCGTCG-CCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGT 148311 | |||||||| ||| |||||||| || | || || | ||||||||||||||| ||||| Sbjct 10504869 CGTCGATGTC-TCGCCCGTGAATCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCGC 10504927 Query 148312 TCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAG 148371 ||||| |||| ||||||||| || || || | || || || ||| | || ||| Sbjct 10504928 TCGGCCACTTTCCCGTTGATCTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAAG 10504987 Query 148372 TACTTGTAATCAAAATCTAGCTCGTAAGCGATGG 148405 | ||||| ||||||| |||||| ||||| Sbjct 10504988 AAGTTGTAGGAAAAATCTCTGTCGTAAATGATGG 10505021 >seq23 Length=24361341 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||| | ||||| || | | | ||||| || || | ||||||||| || ||| || Sbjct 2609144 CAGGCGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGACAGGGTGCG 2609085 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| |||||||| || | | |||| || | ||| || || ||||| |||||||| Sbjct 2609084 GCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTC 2609025 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| ||| ||| |||| | || | ||||| | |||||||| || | || Sbjct 2609024 TTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGT 2608965 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || ||||| || ||||| | |||||||||||| Sbjct 2608964 GATAGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 2608926 >seq3 Length=27041879 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| || |||||||||||| || ||| || |||||| ||||| || || | | Sbjct 11044873 GATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCA 11044932 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || || || ||||| |||||||| ||||| || | Sbjct 11044933 AAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATTTTGGCCTTGACG 11044992 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | || ||||| || | || | || || ||||| || || ||| Sbjct 11044993 TTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTT 11045052 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 11045053 ACGAAGATCTGCAT 11045066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611051059000