Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq25 167 3e-35 seq9 167 3e-35 seq21 120 4e-21 seq10 113 6e-19 seq7 89.7 7e-12 >seq25 Length=55650406 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| || |||||||| | ||||| Sbjct 25903706 TACAAGGTGCTGAAGCAGGTCCACCCCGACACCG---GGATCTCCTCCAA---GGCCATG 25903653 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| | || ||||||| | |||||||| || Sbjct 25903652 AGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATCGCCTCCGAGGCCTCCCGT 25903593 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||||| ||| ||| | | | |||||||||||||| |||||| Sbjct 25903592 CTGGCTCACTACAACAAGCGGTCCACCATCACCTCCAGGGAGATCCAGACCGCTGTGCGC 25903533 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| |||||||| |||| Sbjct 25903532 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGAACCA 25903484 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| || |||||||| | ||||| Sbjct 40051685 TACAAGGTGCTGAAGCAGGTCCACCCCGACACCG---GGATCTCCTCCAA---GGCCATG 40051738 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| | || ||||||| | |||||||| || Sbjct 40051739 AGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATCGCCTCCGAGGCCTCCCGT 40051798 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||||| ||| ||| | | | |||||||||||||| |||||| Sbjct 40051799 CTGGCTCACTACAACAAGCGGTCCACCATCACCTCCAGGGAGATCCAGACCGCTGTGCGC 40051858 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| |||||||| |||| Sbjct 40051859 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGAACCA 40051907 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| || |||||||| | ||||| Sbjct 48899820 TACAAGGTGCTGAAGCAGGTCCACCCCGACACCG---GGATCTCCTCCAA---GGCCATG 48899767 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| | || ||||||| | |||||||| || Sbjct 48899766 AGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATCGCCTCCGAGGCCTCCCGT 48899707 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||||| ||| ||| | | | |||||||||||||| |||||| Sbjct 48899706 CTGGCTCACTACAACAAGCGATCCACCATCACCTCCAGGGAGATCCAGACCGCTGTGCGC 48899647 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| |||||||| |||| Sbjct 48899646 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGAACCA 48899598 Score = 161 bits (178), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| || ||| |||| |||| ||| |||| ||||| Sbjct 30878012 TACAAGGTGCTGAAGCAGGTCCATCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 30878065 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| | || ||||||| | ||||||| || Sbjct 30878066 AGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATCGCCTCCGAGGCTTCCCGT 30878125 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||||| ||| ||| || | | ||||||||||||||||||||| Sbjct 30878126 CTGGCTCACTACAACAAGCGATCCACCATCAGCTCCAGGGAGATCCAGACCGCCGTGCGC 30878185 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| || ||||| |||| Sbjct 30878186 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGAACCA 30878234 Score = 161 bits (178), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| || ||| |||| |||| ||| |||| ||||| Sbjct 37026273 TACAAGGTGCTGAAGCAGGTCCATCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 37026220 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| | || ||||||| | ||||||| || Sbjct 37026219 AGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATCGCCTCCGAGGCTTCCCGT 37026160 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||||| ||| ||| || | | ||||||||||||||||||||| Sbjct 37026159 CTGGCTCACTACAACAAGCGATCCACCATCAGCTCCAGGGAGATCCAGACCGCCGTGCGC 37026100 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| || ||||| |||| Sbjct 37026099 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGAACCA 37026051 Score = 123 bits (136), Expect = 4e-22 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 724995 AACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGC 725054 |||||||| | || ||||||| | |||||||| ||| ||||| | || |||||||||| Sbjct 49824096 AACGACATTTTTGAGCGCATCGCCTCCGAGGCCTCTCGTCTGGCTCACTACAACAAGCGC 49824155 Query 725055 AACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTG 725114 ||| ||| | | | |||||||||||||| ||||| || | ||| |||||| ||| Sbjct 49824156 TCCACCATCACCTCCAGGGAGATCCAGACCGCTGTGCGGCTCCTGCTGCCCGGCGAGCTG 49824215 Query 725115 GCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| ||||||||| || |||||||||| Sbjct 49824216 GCCAAGCACGCCGTGTCTGAGGGCACCA 49824243 >seq9 Length=19682451 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| |||| || |||| ||||| Sbjct 3156729 TACAAGGTGCTGAAGCAGGTCCACCCCGATACCGG-----CATC-TCGTCCAAGGCCATG 3156782 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| | || ||||||| | ||||||| || Sbjct 3156783 AGCATCATGAACTCGTTCGTCAACGACATCTTTGAGCGCATCGCCTCCGAGGCTTCCCGT 3156842 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||| ||||||||| Sbjct 3156843 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACGGCCGTGCGC 3156902 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 3156903 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 3156951 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| |||| || |||| ||||| Sbjct 3159066 TACAAGGTGCTGAAGCAGGTCCACCCCGATACCGG-----CATC-TCGTCCAAGGCCATG 3159119 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| | || ||||||| | ||||||| || Sbjct 3159120 AGCATCATGAACTCGTTCGTCAACGACATCTTTGAGCGCATCGCCTCCGAGGCTTCCCGT 3159179 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||| ||||||||| Sbjct 3159180 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACGGCCGTGCGC 3159239 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 3159240 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 3159288 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| |||| |||| || |||| ||||| Sbjct 3174715 TACAAGGTGCTGAAGCAGGTCCACCCCGATACCGG-----CATC-TCGTCCAAGGCCATG 3174662 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| | || ||||||| | ||||||| || Sbjct 3174661 AGCATCATGAACTCGTTCGTCAACGACATCTTTGAGCGCATCGCCTCCGAGGCTTCCCGT 3174602 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| ||| ||| | | | ||||||||||| ||||||||| Sbjct 3174601 CTGGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACGGCCGTGCGC 3174542 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 3174541 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 3174493 >seq21 Length=29933922 Score = 120 bits (132), Expect = 4e-21 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||| || |||||||| || || |||||| || |||| || |||| |||||| || Sbjct 17151303 CCATGAGTATAATGAACTCCTTCGTGAACGACCTGTTCGAGCGAATCGCCACCGAAGCGT 17151362 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 |||||| || | | ||| |||||| ||| ||| || | ||| | |||||||||| Sbjct 17151363 CTCGCCTTGCTCAGTACAATAAGCGCGTCACCATCACCAGCAGGGAGGTGCAGACCGCCG 17151422 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | ||| | ||| ||| |||||||||| ||||||||| ||||||||||||| Sbjct 17151423 TCAGACTGCTGCTGCCCGGGGAACTGGCCAAGCACGCCGTGTCCGAGGGCACCA 17151476 >seq10 Length=32721116 Score = 113 bits (124), Expect = 6e-19 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 |||| |||||| ||||||||||||| | || | |||||||||||||||| |||| | Sbjct 10503632 TGCTGCTGGCGCCCATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCA 10503573 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGG 263053 |||||| ||| |||||||||||||| ||| | ||||| || || || || | | Sbjct 10503572 TCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGAGTTCCAGATTG 10503513 Query 263054 TCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGA 263098 |||||| ||||| ||||| || || |||||||||||||| Sbjct 10503512 TCAACCCTCACCTCCTCAAGGATCTGACGGAGCGCGGCCTGTGGA 10503468 Score = 107 bits (118), Expect = 3e-17 Identities = 105/133 (79%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| ||||| ||| | |||| | ||| ||||| || ||||||||| ||||| Sbjct 10504260 CAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAAACCGGGACCCCCTACATGCTCTAC 10504201 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 |||||||| ||||| || ||||||||||||||||||||||||| | || | ||| Sbjct 10504200 AAGGACGCTTGCAACCGGAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 10504142 Query 262210 CCTGTGCACCGAG 262222 ||| ||||| ||| Sbjct 10504141 CCTCTGCACGGAG 10504129 >seq7 Length=23593460 Score = 89.7 bits (98), Expect = 7e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | | | ||||| || || | ||||| | | || ||||| |||||||||||| Sbjct 3930818 CGCTTCACGCAGGAGGTGCAGGTGACGGAGGCCAGGTGTTTCTACGGCTTCCAGATCGCC 3930877 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || |||||||||||||| | ||| || ||||| ||||||||| ||||||| || Sbjct 3930878 ATGGAGAACATCCACTCTGAGATGTACAGCCTGCTGATTGACACCTACATCAAGGATCCC 3930937 Query 1456072 GTCGAGA 1456078 ||||| Sbjct 3930938 AGCGAGA 3930944 Score = 86.0 bits (94), Expect = 9e-11 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 1456193 CTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAA 1456251 ||| ||||| || ||||| ||||| ||||| || ||| ||||||||| ||||| || Sbjct 3931207 CTTCGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCTTCTGGCTGAA 3931266 Query 1456252 GAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 |||| | ||||| |||||||||| | ||| |||||||| | ||||| || ||||| | Sbjct 3931267 GAAGAGAGGCCTGATGCCCGGTC-TGACCTTCAGCAACGAGCTCATCAGCCGAGACGAGG 3931325 Query 1456312 T 1456312 | Sbjct 3931326 T 3931326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177808788704050