Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq10 163 3e-35 seq23 105 7e-18 seq3 98.7 1e-15 >seq10 Length=32721116 Score = 163 bits (180), Expect = 3e-35 Identities = 908/1431 (63%), Gaps = 34/1431 (2%) Strand=Plus/Minus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 |||| || |||| |||||||| || || || ||| || |||||||| || | || Sbjct 10504960 CTACCTGCTGAAGATCAACGGGAAAGTGGCCGAGCGACCGCAGCACATGCTCATGAGGGT 10504901 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 | |||| || |||||||| |||||| ||||||||| | || || ||| | | |||| Sbjct 10504900 GTCGGTTGGGATTCACGGGCGAGACATCGACGCCGCCGTCGAGACCTACAACCTCCTGTC 10504841 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCA 7703 ||| ||| || ||||| || || ||| | || ||| || || ||| ||| || Sbjct 10504840 GGAGAAGTGGTTCACCCACGCCTCTCCGACCCTCTTCAACGCCGGGACCAACCGGCCGCA 10504781 Query 7704 ATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACAC 7763 ||||| || || |||| ||||| || ||||||||||| ||||| ||| |||| Sbjct 10504780 GCTGTCCAGTTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATCTACGACAC 10504721 Query 7764 GCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGA 7823 ||| | || || |||||||| | || ||||| ||||| || || | | Sbjct 10504720 CCTGAAGCAGTGTGCGCTCATTTCCAAGTCCGCTGGCGGGATAGGCGTGGCGGTGAGCTG 10504661 Query 7824 CGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCC 7883 | | || | | || ||| ||||| ||||||||| || ||| ||| || | ||| Sbjct 10504660 CATCCGATCGACGGGAAGCTACATCGCAGGCACCAACGGCAACTCCAACGGGTTGGTGCC 10504601 Query 7884 CATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAA 7940 ||| || | || | ||| ||| | | || | || |||||||| || ||| | Sbjct 10504600 GATGCTGAGAGTTTACAACAACACCGCTCGGTACGTCGACCAGGGCGGCAACAAGAGACC 10504541 Query 7941 AGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCT 8000 || ||| ||||| || ||||||| |||||| ||| | | || | || | || Sbjct 10504540 CGGGGCCTTCGCCATGTACCTGGAGCCATGGCACTTCGACGTGTTCGACTTCCTGGAGCT 10504481 Query 8001 GCGTCGCAACATGGGTTGCGAAGA-CAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGG 8059 | |||| || || || ||| | ||| | || || |||| || |||||| Sbjct 10504480 GAAGAAGAACACAGGAAAGGAGGAGCAG-AGAGCCAGAGACCTTTTCTACGCCTTGTGGA 10504422 Query 8060 TGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCG 8119 | || || ||||| |||| | | || | | || | ||||| | ||||| ||| Sbjct 10504421 TCCCTGACCTGTTCATGAAGAGAGTGGAGAGCAACCAGGACTGGTCCTTGATGTGTCCC- 10504363 Query 8120 ATCG-TTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAA 8178 | || || ||| | | | | || | || || | | |||| || Sbjct 10504362 AGCGAGTGTCCTGGGCTGGACGAGTGCTGGGGAGAGGAGTTCGAGAAGCTCTACACCAAA 10504303 Query 8179 TACGAACACG-ACGGCGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCG---CGC 8234 || || | | | || | || | || ||||| |||| | | || | | ||| Sbjct 10504302 TATGAGAAGGAAGGGAGAGT-GAAGAGGGTGGTGAAGGCGC---AGCAGCTCTGGTACGC 10504247 Query 8235 CATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAA 8294 ||| ||||| | || | ||||||||| | || |||||||| ||||| ||||||||||| Sbjct 10504246 CATCATCGAGTCCCAGACCGAAACCGGGACCCCCTACATGCTCTACAAGGACGCTTGCAA 10504187 Query 8295 CGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAAT 8354 | || ||||| || ||| |||||||||| |||||||| || ||| | || | Sbjct 10504186 CCGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGCAGCAACCTCTGCACGGAGGT 10504127 Query 8355 TGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAA 8414 || |||||| | ||||| |||||||| ||||| || || || | | || Sbjct 10504126 GGTGGAGTACACCAGCAAGGACGAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAA 10504067 Query 8415 CGCGTTCGTTGATCGACGCTCAAAC--ACTTACGACTTTGAACAATTGAAAAACGCCGT- 8471 | || ||| |||| | | |||| |||| || || || | | |||| Sbjct 10504066 CATGTACGT-----CACGCCAGAGCGGACTTTCGAC-TTCAAGAA--GCTGGCCTCCGTC 10504015 Query 8472 -GCAA-GTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAA 8529 ||| || | || || | | ||||| || |||| | || || | Sbjct 10504014 ACCAAGGTAATTGTGAAAAACCTCAACAAGATCATCGACATCAACTACTACCCGGTTCCT 10503955 Query 8530 GAAGC-GCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGC 8588 ||||| | | | || |||| ||||||||| || | || | ||||| || |||||||| Sbjct 10503954 GAAGCTGAGACT-TCCAACAAGCGCCACAGGCCGATCGGGATCGGCGTCCAGGGTCTGGC 10503896 Query 8589 CGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACAT 8648 |||||| || | || |||| | ||| | |||||| | ||||| | |||||||||| Sbjct 10503895 CGACGCCTTCATCCTGATGCGGCACCCGTTCGAAAGTCCCGAAGCTCAGCTGCTCAACAT 10503836 Query 8649 AAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGA 8708 | || || || | || ||| ||| | || |||||||| | || ||| ||| Sbjct 10503835 CCAGATCTTCGAGACCATCTACCACGCCGCCCTGGAGGCCAGCTGCGAGCTCGCCGCAGA 10503776 Query 8709 ATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGA 8768 | ||| | ||||| |||||| |||| || | |||| || || | || ||||| Sbjct 10503775 GCTCGGCCCCTACGAGACGTACGAGGGCTCGCCCGTCAGCAAGGGCATCCTCCAGTACGA 10503716 Query 8769 CATGTGGAATGTCACGCCCACC--TCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATT 8826 ||||||| | ||||| ||| ||||| ||| | | ||| |||| || || Sbjct 10503715 CATGTGGGAGAAGACGCCGACCGACCTTTG-GGACTGGAAGC-TGCTGAAGGAAAAGATC 10503658 Query 8827 GCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCT 8886 | || ||| || | || ||| || |||| ||||||||| ||| | || || Sbjct 10503657 GGCAAACACGGCGTGAGGAACAGCCTGCTGCTGGCGCCCATGCCCACGGCCTCCACCGCC 10503598 Query 8887 CAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 || || |||| |||||||| ||| | ||| ||| ||||| |||| | ||| Sbjct 10503597 CAGATCCTGGGCAACAACGAGTCCATCGAGGCGTACACCAGCAACATCTAC 10503547 >seq23 Length=24361341 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 |||||| || || || | || ||||| || ||||| ||||| || | ||||||||| Sbjct 2609153 TCCTCCCCTCAGGCGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGA 2609094 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | |||| | || || ||||||||||| ||||| |||| | |||||| || || || Sbjct 2609093 CAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 2609034 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||||||||| || ||||| ||| || || || | || || | ||||| Sbjct 2609033 AATGCCTTCTTTATCCTGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCAC 2608974 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || || || || || || | ||||| |||||||| ||||| || Sbjct 2608973 CTCCAGGGTGATAGTCTTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 2608923 >seq3 Length=27041879 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || ||||| || |||||||| || || |||||||||||| Sbjct 11044840 CCACCCCTCAGACGGAGAACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 11044899 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| || | | |||||| || || || Sbjct 11044900 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGG 11044959 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| || || ||||| ||||| || | |||||| | |||||| Sbjct 11044960 ATGCCCTCTTTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACC 11045019 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || | || || ||||| || ||||| Sbjct 11045020 TCCAGGGTGATTGTCTTGCCAGTGAGGGTCTTTACGAAGATCTGCAT 11045066 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 134508 AGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGC 134567 ||||| || ||||| ||||| || |||||||||||| | |||| | || || ||| Sbjct 11046872 AGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGC 11046931 Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 || || || ||||| |||| | |||||| || || || ||||| || || || || || Sbjct 11046932 TGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATC 11046991 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 || || || || | || || | ||||| || || || |||||||| ||| Sbjct 11046992 TTGGCCTTAACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCG 11047051 Query 134688 GTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || | ||||| || || || ||||| ||| Sbjct 11047052 GTGAGGGTTTTCACAAAGATCTGCATCTTG 11047081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398242063000