Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 2e-13 seq23 86.0 9e-12 >seq4 Length=33259606 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 214104 TGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACA 214163 |||| || ||||| || || ||| ||||||||| ||||||||||| ||||||||| Sbjct 26560731 TGTTCGGGCTCGTCCCAGGCCTCACCATGTACGCCACCATCTGGCTGAGGGAGCACAACC 26560790 Query 214164 GGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 |||| || ||| | |||||| || || ||| ||| | ||||| ||||| ||||||| Sbjct 26560791 GGGTGTGTGACATCCTGAAAGGCGAACATCCGACCTGGGAGGACGAGCAGCTTTTCCAGA 26560850 Query 214224 TCACTCGTTTAATCATTA 214241 ||| | | ||||||| Sbjct 26560851 CCACCAGACTTATCATTA 26560868 >seq23 Length=24361341 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 214094 GGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGA 214153 ||| | ||| |||| || ||| | |||||||| ||||||||| | ||||| ||| Sbjct 9084039 GGTCAGGAGGTGTTCGGGCTCCTTCCCGGTTTGGGTTTGTACGCCACACTGTGGCTCAGA 9083980 Query 214154 GAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAG 214213 ||||||||||| || || ||| | |||||| |||||| || ||| |||| || ||| Sbjct 9083979 GAGCACAACAGAGTCTGTGACATCCTGAAAGCAGAGCATCCTACCTGGGACGATGAGCAG 9083920 Query 214214 CTGTTCCAGA 214223 || ||||||| Sbjct 9083919 CTTTTCCAGA 9083910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723340573956000