Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq10 390 2e-103 seq3 98.7 1e-15 seq5 87.8 2e-12 >seq10 Length=32721116 Score = 390 bits (432), Expect = 2e-103 Identities = 1266/1951 (65%), Gaps = 21/1951 (1%) Strand=Plus/Plus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| || ||||||| | |||||| | | | | ||||| || || || Sbjct 10503452 TTCTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGATCCTTGAGGAGGTGAGGGTTG 10503511 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || || || || || || | ||| || || ||||| || || ||||| || | || Sbjct 10503512 ACAATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCG 10503571 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | || || || || ||||| || || || || || || || ||||| || |||| || Sbjct 10503572 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATGGGCGCCAGCAGC 10503631 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | || || || | || ||| | ||| || || || || | ||||| |||||||| Sbjct 10503632 AGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTTCCAGTCCCAAAGG 10503691 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 || | || | ||| | ||||| || || || || || || | || || Sbjct 10503692 TCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAGCCC 10503751 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 | || || || || || || || | | || || || || || ||||| | || || Sbjct 10503752 TCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGCG 10503811 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072 | || || || ||||| |||| | ||||| || ||||| |||| ||||| || Sbjct 10503812 TGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAACGGG 10503871 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 | | | || || || || || |||| ||||| || || || ||||| || || || Sbjct 10503872 TGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGG 10503931 Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192 | ||| || ||| | |||||||| |||| || || || || || || || || || || Sbjct 10503932 CGCTTGTTGGAAGTCTCAGCTTCAGGAACCGGGTAGTAGTTGATGTCGATGATCTTGTTG 10503991 Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCA-TC 69251 || ||| || | ||| || ||| || || || || || |||| || Sbjct 10503992 AGGTTTTTCACAATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAA-GTCCGCTC 10504050 Query 69252 TA---TAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGA 69308 | | || |||| || || || | || || || || || || || ||||| | Sbjct 10504051 TGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTT 10504110 Query 69309 ATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTG 69368 | | || | | | ||| || || || || || || ||||| || ||||| || || Sbjct 10504111 GCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTG 10504170 Query 69369 CTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAAT 69428 ||| || ||||| ||| || ||||||||||| || || | || || || ||||| | Sbjct 10504171 CTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGT 10504230 Query 69429 CTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTT 69488 ||| || ||||| || | | ||| | | || || | || |||| || || Sbjct 10504231 CTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTCTTC--ACTCTC 10504288 Query 69489 C--TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT 69546 | || || ||||||| || || ||| ||||| || |||||||| || |||| Sbjct 10504289 CCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGC 10504348 Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 |||||||| || | ||||||||||| ||||| | | | || |||| ||||| Sbjct 10504349 CCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATG 10504408 Query 69607 AATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC 69665 || || || || ||||| | || || ||| || ||||||| ||| | || || ||||| Sbjct 10504409 AACAGGTCAGGGATCCACAAGGCGTAGAAA-AGGTCTCTGGCTCTCTGCTCCTCCTTTCC 10504467 Query 69666 TGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 69725 ||| || || || || || || || || | | || | |||||||| || || || || Sbjct 10504468 TGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCATGGCTCCAGGTACAT 10504527 Query 69726 CGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATA 69785 || | | | || |||| || || || ||||| || | ||| | || ||||| || || Sbjct 10504528 GGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTA 10504587 Query 69786 GACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCC 69845 |||||||||||||| | | || || || || || || || || | || || ||||| Sbjct 10504588 AACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCC 10504647 Query 69846 TCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGC 69905 | | || || || | | | ||||| || || || || || || || || Sbjct 10504648 CGTCGATCGGATGCAGCTCACCGCCACGCCTATCCCGCCAGCGGACTTGGAAATGAGCGC 10504707 Query 69906 ACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAA 69965 ||| | |||| ||||| || || || || ||||| || || ||||| || || || Sbjct 10504708 ACACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAA 10504767 Query 69966 ACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGT 70025 || || |||| || | | | || || || || || | || ||||| ||||| || Sbjct 10504768 GCAACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGT 10504827 Query 70026 GAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATG 70085 |||||| || || || || || ||||| || || | || | || || || | | || Sbjct 10504828 GAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTG 10504887 Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145 ||| || | || || | ||| | ||| ||||| ||||| || || ||| || || Sbjct 10504888 AATCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGAT 10504947 Query 70146 TTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205 |||| |||||| || |||||||| || || || || ||||||| ||||| ||||| Sbjct 10504948 CTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAAAAATCTCT 10505007 Query 70206 TTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCA-TAACAG 70264 |||||||| || || || || ||||| | || | || || || | | | Sbjct 10505008 GTCGTAAATGATGGAGGAGTTGAGGCGGTCCTTGTTTTCCATGACGATGTCGAGCGTCTG 10505067 Query 70265 TAGGTGAGATAATCGGAGA---TCGTTTACCATTTTTAGGATTAACATAGTTGAATAAAT 70321 | ||||| || ||||| ||||| || ||| || |||||| ||| | | Sbjct 10505068 CTTG-GAGATCATGGGAGAGTGGCGTTT---GTTCAGAGGGTTGACATAGGCGAACAGGT 10505123 Query 70322 CTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTC 70381 | ||||| || || || || | || || || ||||| || | || || | ||| || | Sbjct 10505124 CCTCCATCACCTCGCTGAACACCTTCTTGGTCTCCTTATGCAGGTTGGAGACGGCAATCC 10505183 Query 70382 TGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAG 70441 | || || || || || ||||| || |||| || || || || || || ||||| | Sbjct 10505184 TCGCGGCCAGGATGGCGTAGTCGGGGTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCG 10505243 Query 70442 CTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| ||| |||| || | || || || ||| | || | || || || || ||||||| Sbjct 10505244 CTAGCGTGTCTAGCTCCACGGTGGTGACGCCGCTGTACAAGCCCTGTATCACCTTCATGG 10505303 Query 70502 CTATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCT-AATACGA 70560 || | ||||| | || || | |||||| || || || || |||| || || Sbjct 10505304 TGATCTGAGCCGGATCCACAAAGTCCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGG 10505362 Query 70561 GATGTAATTTTATCAAACATAACATTCTCCT 70591 || || |||||||||||||| || ||||| Sbjct 10505363 GAGGTGATTTTATCAAACATGACGCGCTCCT 10505393 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| ||| |||| ||||| || || ||||| || |||| || || ||||| || | Sbjct 10503159 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTTCCGTAGTTTGGCTCAGCGATATGGATGT 10503218 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| ||| || || || |||||||| ||||| | ||||||||||| || | | ||| Sbjct 10503219 TCAGCGACTGGCTCTGGTCGATGAAGGCTCCACGGTCTGCCGCCATCTTCAGCACGGTCT 10503278 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG 68609 | || | |||||||||| || ||| | | ||| || | ||||||||| Sbjct 10503279 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGATCATCTGG 10503327 >seq3 Length=27041879 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 |||||||| || ||||| || | ||||| || |||||||||||||| || |||| || Sbjct 15255871 ATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTCCTG 15255930 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || |||||||||||||| || || |||| ||||| || || |||| || ||||| || Sbjct 15255931 TTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCGACTCGATGAT 15255989 >seq5 Length=26266306 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || ||||| | |||||| || | || || || ||||| || || | ||| | Sbjct 12374825 CCTCATCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGACCTGGCATGAGGCCTCTCTTCT 12374884 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| | || ||||| || || || || ||||| || || || ||||||||||| | Sbjct 12374885 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCAAAAG 12374944 Query 39759 CAACAAGTCTCTCTCC 39774 | ||||| | ||| || Sbjct 12374945 CCACAAGACGCTCCCC 12374960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908585341000