Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq10 159 4e-34 seq3 100 4e-16 seq5 91.5 2e-13 seq7 89.7 6e-13 >seq10 Length=32721116 Score = 159 bits (176), Expect = 4e-34 Identities = 955/1503 (64%), Gaps = 66/1503 (4%) Strand=Plus/Plus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || || | | || || |||| |||||| |||||| Sbjct 10503454 CTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGATCCTTGAGGAGGTGAGGGTTGAC 10503513 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 ||| ||||| || | || || | ||||||||| | ||||| | || | Sbjct 10503514 AATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGAT 10503573 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || ||||||||||| || ||||| || |||| || || Sbjct 10503574 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATGGGCGCCAGCAGCAG 10503633 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGA- 110852 ||||| | | || | | ||| |||||| || | | |||||| | | Sbjct 10503634 GCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTTCCAGTCCCAAAGGTC 10503693 Query 110853 GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCAC-CCCTTGG-GACGCGGGAGAACC 110910 | | || || || |||||||||| |||| || | |||||| |||| | ||| || Sbjct 10503694 GGTCGGCGTCTTCT-CCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAG--CC 10503750 Query 110911 CTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 110970 ||| | || || |||| || | || | || | || ||||| |||||||||| || Sbjct 10503751 CTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGAGCTCGCAGCTGGCCTCCAGGGCGGC 10503810 Query 110971 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 111030 ||| || ||||| || ||||| | || | | || ||||| || || | Sbjct 10503811 GTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAACGG 10503870 Query 111031 GTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 111089 || || ||| || || || | || || ||||| || || || | || || || |||| Sbjct 10503871 GT-GCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGT 10503929 Query 111090 GTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTC 111146 | ||| | || || | | ||| ||| || || || | || |||| |||| Sbjct 10503930 GGCGCTTGTTGGAAGT---CTCAGCTTCAGGAACCGGGTAGTAGTTGATGTCGATGATCT 10503986 Query 111147 GGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGC 111206 ||| || ||||| || | ||| |||| || || | | || ||||| | Sbjct 10503987 TGTTGAGGTTTTTCACAATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCC 10504046 Query 111207 GAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 111266 | |||| |||| ||| | |||||||| || |||| ||||| || ||| || Sbjct 10504047 G---CTCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCT 10504103 Query 111267 CATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCA 111326 | ||||| |||||||| | | || || || | |||| | ||| || || |||| Sbjct 10504104 CGTCCTTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCA 10504163 Query 111327 AATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 111386 |||| ||||| |||||| |||||| || |||||||||||||||||||| ||||| | Sbjct 10504164 GGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGG 10504223 Query 111387 TCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTG 111445 | || ||||| || | || || || | ||| | | | ||| || || | || Sbjct 10504224 TTTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGCGCCT-TCACCACCCTCTTC 10504282 Query 111446 GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTC 111504 | | || ||| ||| || || |||||||| || |||||||| ||| | || || Sbjct 10504283 ACTCTCCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCC-CAGCACTC 10504341 Query 111505 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTCAACC 111562 | || || || || | ||||| | | ||||| | || || ||| || Sbjct 10504342 GTCCAGCCCAGGACACTCGCTGGGACACATCAAGGACCA--GTCCTGGTTGCTCTCCACT 10504399 Query 111563 CGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCT 111622 | ||||||||| ||||| || ||||||| || | || || ||||| | ||| Sbjct 10504400 CTCTTCATGAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCC 10504459 Query 111623 TCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTC 111681 || | ||| ||| || | | ||| ||||| || | | || |||||||||||| Sbjct 10504460 TCCTTTCCTGTGTT-CTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCATGGCTC 10504518 Query 111682 AAGATAGACTGCGA------TAGATCCCTT-TCGACGCCCAGCTTGATTTACATAGCGCG 111734 || || | |||| | || ||| | | ||||| || | || || || | Sbjct 10504519 CAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCCGCCC----TGGTCGACGTACCGAG 10504574 Query 111735 CTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCC 111794 | ||| ||| | || | ||||| || | | || | || | || || || || Sbjct 10504575 CGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCC-- 10504632 Query 111795 GAATACGAGATTTATTGGCTCTCACATC-AT-GGATG---------TGCATCCCAATACC 111843 | ||| || ||| || | || || ||||| || || || || Sbjct 10504633 -----TGCGATGTA---GCT-TCCCGTCGATCGGATGCAGCTCACCGCCACGCCTATCCC 10504683 Query 111844 CCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGA 111903 ||||| |||| || || ||||||||| | | || || | ||||| || | ||| Sbjct 10504684 GCCAGCGGACTTGGAAATGAGCGCACACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCT 10504743 Query 111904 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGTACCAGCA 111961 ||| ||||| |||||| |||||||||||||||| |||||| | ||| || || || Sbjct 10504744 GTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTG--GTCCCGGCG 10504801 Query 111962 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTC 112020 ||||||||||| || | ||||| ||||| || | | |||| || ||| ||||| Sbjct 10504802 TTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGGAGGTTGTAGGTCTC 10504860 Query 112021 CAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTG 112080 | | | | || |||||| |||||| || || | | |||| ||||| ||||| ||| Sbjct 10504861 GACGGCGGCGTCGATGTCTCGCCCGTGAATCCCAACCGACACCCTCATGAGCATGTGCTG 10504920 Query 112081 TGG 112083 || Sbjct 10504921 CGG 10504923 >seq3 Length=27041879 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| ||| |||||| || | ||| ||||| || | ||| ||| || || || Sbjct 15255846 CTCATCTTTACTTGTGTATTCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCC 15255905 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||| | ||||| ||||| ||||||| || ||||||||||||||||| ||||| || Sbjct 15255906 CAGATTTTGCTGGTTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACC 15255965 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 |||||| ||||| || | || || || | ||| Sbjct 15255966 CGTCTCTGTCTGCGACTCGATGATGGCGTACCA 15255998 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| ||||||||| |||| | | ||||| ||||||||||| || || ||||| Sbjct 15254254 GTAGATGTTGCTTGTGTATGCCTCAATGGACTCATTGTTACCCAAGATCTGGGCAGTGGA 15254313 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTT 110799 ||||| |||||||| |||| | |||||||| Sbjct 15254314 AGCTGTGGGCATTGGGGCCAAAAGCAGACTGTT 15254346 >seq5 Length=26266306 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||| | | ||| ||||| || ||| || |||||||||||||| || | ||||| Sbjct 12374825 CCTCATCCCTGCTAATGAGTTCGTTGGAGTAGGTAAGACCTGGCATGAGGCCTCTCTTCT 12374884 Query 122738 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACG 122797 ||| ||| || ||||| |||||| || |||||||| || |||||||| ||||| | Sbjct 12374885 TCAGCCAGTAGATAGCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCAAAAG 12374944 Query 122798 CAAAAAGGCGTTC 122810 | | ||| || || Sbjct 12374945 CCACAAGACGCTC 12374957 >seq7 Length=23593460 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || ||||||||||||||||||||||||||||||||||| || || |||||| ||||| Sbjct 3932155 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGAGAAATGTTCTCCATG 3932096 Query 122431 AAGTCAAATGGATTCTTCG 122449 ||||| || || |||| || Sbjct 3932095 AAGTCGAACGGGTTCTCCG 3932077 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || ||||||||||||||||||||||||||||||||||| || || |||||| ||||| Sbjct 3939070 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGAGAAATGTTCTCCATG 3939129 Query 122431 AAGTCAAATGGATTCTTCG 122449 ||||| || || |||| || Sbjct 3939130 AAGTCGAACGGGTTCTCCG 3939148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031803740000