Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq10 167 3e-36 seq3 98.7 1e-15 seq5 93.3 5e-14 seq7 87.8 2e-12 >seq10 Length=32721116 Score = 167 bits (184), Expect = 3e-36 Identities = 891/1397 (64%), Gaps = 40/1397 (3%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 10503548 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 10503607 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || ||||||||||| |||| || |||||||| | | || | || | || |||| Sbjct 10503608 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCC 10503667 Query 118302 TTGAG-AGCGTCCCAGTCGTA---GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTG 118357 || || ||| ||| |||| | || | | |||| | || ||||| || |||| Sbjct 10503668 TTCAGCAGCTTCC-AGTCCCAAAGGTCGGTCGGCGTCTTCTCC---CACATGTCGTACTG 10503723 Query 118358 GAGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 118415 |||||| || | | |||| ||||| ||||| | ||||| || ||||| | | Sbjct 10503724 GAGGATGCCCTTGCTGACG--GGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCG 10503781 Query 118416 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTC 118475 || | ||| |||| ||||| ||||| ||||| || || || || || || | || Sbjct 10503782 GCGAGCTCGCAGCTGGCCTCCAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTG 10503841 Query 118476 ATTGCCTTGGCCTCGTCGGAAT--CAAACGCGAGTCGGCACAAAATAAATACATCCGCGA 118533 | || || ||| ||| | | |||| | | || || || || | || || | Sbjct 10503842 AGCAGCTGAGCTTCG--GGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCA 10503899 Query 118534 GACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCA 118593 |||| ||||| |||| || || || | || | | | || || || ||| | Sbjct 10503900 GACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCTCAGCTTCAGGAA 10503959 Query 118594 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 118653 | || || | || | ||||| | | | || || ||||| | ||||| |||| Sbjct 10503960 CCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACAATTACCTTGGTGACGG 10504019 Query 118654 CATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGA 118713 ||||| | | | || ||| | || |||| |||| ||| | ||||||| Sbjct 10504020 AGGCCAGCTTCTTGAAGTCGAAAGTCCG---CTCTGGCGTGACGTACATGTTGAGGGCGA 10504076 Query 118714 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGC 118773 | || ||||| || || || | ||| ||||| |||||||| | | ||||||| Sbjct 10504077 TGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGC 10504136 Query 118774 ACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 118833 | | ||| | ||| |||||||||| ||||| || || ||| ||| || || | Sbjct 10504137 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGT 10504196 Query 118834 CCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA 118893 ||||||| |||||||| || ||||| || || || ||||||| || || || | ||||| Sbjct 10504197 CCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGA 10504256 Query 118894 CAT-CGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGG 118952 | | || || || | || ||| ||| || | ||| || || |||||||| Sbjct 10504257 GCTGCTGCGCCTTCACCACCCTC-TTCACTCTCCCTTCCTTCTCATATTTGGTGTAGAGC 10504315 Query 118953 GCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG-CAGAAGAG 119011 || ||||| || ||| | ||| ||||| || || ||||| || | | Sbjct 10504316 TTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCG-CTGGGACACATCAA 10504374 Query 119012 AGACCATTGACCACCCTCCTCA--ACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 119069 ||||| | || | ||| || | ||||||||| ||||| |||||||| | || Sbjct 10504375 GGACCAGT--CCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCG 10504432 Query 119070 GAGAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 |||| || || | | | ||| || | | || || || || ||||| || Sbjct 10504433 TAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGAA 10504491 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGAC 119184 ||| | | || |||||| || |||||||||| |||| | ||| || | Sbjct 10504492 GTCGAACACGTCGAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTT 10504551 Query 119185 GACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATAC 119244 | || |||||| || |||| || ||| ||| | || | ||||| || | | | Sbjct 10504552 G-CCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACC 10504610 Query 119245 CATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGC--TCTGACATCGTGGAT 119302 | | ||| | ||| || || || || || ||| | | || || | | Sbjct 10504611 CGTTGGAGTTGCCGTTGGTGCCTGCGATGT-AG-CTTCCCGTCGATCGGATGCAGCTCAC 10504668 Query 119303 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 119362 || || || || || || |||| || || |||| |||| | | || || |||| Sbjct 10504669 CGCCACGCCTATCCCGCCAGCGGACTTGGAAATGAGCGCACACTGCTTCAGGGTGTCGTA 10504728 Query 119363 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCT 119422 ||| || ||||| ||| |||| | |||| |||||||| || |||| || |||| Sbjct 10504729 GATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCG 10504788 Query 119423 GGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 119481 | || || ||||||||||| || || | |||||| ||||| || | | |||| Sbjct 10504789 GTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGGA 10504847 Query 119482 TGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCA 119541 || ||||||||| | | ||||| |||||| ||||||||| || | ||| |||| || Sbjct 10504848 GGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTGAATCCCAACCGACACCCTCA 10504907 Query 119542 TAAACATGTATTGGGGT 119558 | | ||||| || ||| Sbjct 10504908 TGAGCATGTGCTGCGGT 10504924 >seq3 Length=27041879 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||||| ||||| | ||||||||||||||||||| ||||| ||||| Sbjct 15254255 TAGATGTTGCTTGTGTATGCCTCAATGGACTCATTGTTACCCAAGATCTGGGCAGTGGAA 15254314 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 ||||||||||| || |||| || || ||||| Sbjct 15254315 GCTGTGGGCATTGGGGCCAAAAGCAGACTGTT 15254346 >seq5 Length=26266306 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 130049 ATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATC 130108 |||||||| || ||| || |||||||||||||| || | |||||||| |||| | || Sbjct 12374839 ATGAGTTCGTTGGAGTAGGTAAGACCTGGCATGAGGCCTCTCTTCTTCAGCCAGTAGATA 12374898 Query 130109 GCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTC 130167 ||| |||||||| |||||||| ||||||||||| || || || | |||||||| Sbjct 12374899 GCAGCGAATGAGCCTGAGAAGAAAATCCCCTCCACTGCTGCAAAAGCCACAAGACGCTC 12374957 >seq7 Length=23593460 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| ||| |||||| || || |||| |||||| ||||| || || | ||||| Sbjct 3931325 CCTCGTCTCGGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 3931266 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| |||||| || || || || |||||||||||||| ||||||||| ||||| | Sbjct 3931265 TCAGCCAGAAGATGGCGGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCGAAGG 3931206 Query 130155 C 130155 | Sbjct 3931205 C 3931205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435006739000