Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq10 140 4e-28 seq7 91.5 2e-13 seq5 84.2 3e-11 >seq10 Length=32721116 Score = 140 bits (154), Expect = 4e-28 Identities = 955/1510 (63%), Gaps = 80/1510 (5%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||| | ||| | | || ||||| ||| |||||| || | | | Sbjct 10504923 CCGCAGCACATGCTCATGAGGGTGTCGGTTGGGATTCACGGGCGAGACATCGACGCCGCC 10504864 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || |||| | | || ||||| ||||| | || |||||||| Sbjct 10504863 GTCGAGACCTACAACCTCCTGTCGGAGAAGTG-GTTCACCCACGCCTCTCCGACCCTCTT 10504805 Query 104341 CAATGCTGGTACACCAA--GACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||| || || || ||| | || || |||||||||||||||| |||||| ||||| Sbjct 10504804 CAACGCCGGGAC--CAACCGGCCGCAGCTGTCCAGTTGCTTCCTGCTCGCCATGAAGGAC 10504747 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| ||| | || ||||| | || || | | ||||||||| || || |||| ||| Sbjct 10504746 GACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGTGCGCTCATTTCCAAGTCCGCT 10504687 Query 104459 GGGGGTATTGG---------GATGCACATCC-AT-GATGTGAGAGCCAATAAATCTCGTA 104507 || || || || || ||||| || || | || ||| || ||| | Sbjct 10504686 GGCGGGATAGGCGTGGCGGTGAGCTGCATCCGATCGACGGGA-AGC---TACATCGC--- 10504634 Query 104508 TTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 104567 || || || || | || | || | | || ||||| | || | ||| || Sbjct 10504633 ----AGGCACCAACGGCAACTCCAACGGGTTGGTGCCGATGCTGAGAGTTTACAACAACA 10504578 Query 104568 CAGCGCGCTATGTAAATCAAGCTGGGCGTCGA-AAG------GGATCTATCGCAGTCTAT 104620 | |||| ||| || | | ||||| | | ||| || | |||| | || Sbjct 10504577 C----CGCTCGGTACGTCGACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTAC 10504522 Query 104621 CTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGAC 104680 || |||||||||||| || | | || ||||| ||| || ||| ||| | Sbjct 10504521 CTGGAGCCATGGCACTTCGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAG 10504462 Query 104681 GAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAG 104740 |||||| | | | | || || |||| ||| | ||||| || || || ||||||||| Sbjct 10504461 GAGGAGCAGAGAGCCAGAGACCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATGAAG 10504402 Query 104741 AGAGTTGAGGAGAGTGGC---AATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTC 104797 ||||| |||||| | | ||||| | | ||||| | || ||||| || Sbjct 10504401 AGAGT---GGAGAGCAACCAGGACTGGTCCTTGATGTGTCCCAGCGAGTGTCCTGGGCTG 10504345 Query 104798 TCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG 104856 ||| ||| | ||| |||||||| || || ||||| || || ||| | ||||| | Sbjct 10504344 GACGAGTGCTG-GGGAGAGGAGTTCGAGAAGCTCTACACCAAATATGAGAAGGAAGGGAG 10504286 Query 104857 GGCGACTGCGACGGTGCCAGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCG 104915 | || | |||| || || | | | ||| | || || || |||| || |||| Sbjct 10504285 AGTGAAGAGGGTGGTG-AAGGCGCAGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCG 10504227 Query 104916 AGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGA 104975 | || || || || |||||||| ||||| ||||| || |||| ||||| || || ||| Sbjct 10504226 AAACCGGGACCCCCTACATGCTCTACAAGGACGCTTGCAACCGGAAGAGCAACCAGCAGA 10504167 Query 104976 ATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAG 105035 | |||| |||||| | ||| ||||| || || | |||| | || ||| | Sbjct 10504166 ACCTGGGCACCATCAAGTGCAGCAACCTCTGCACGGAGGTGGTGGAGTACACCAGCAAGG 10504107 Query 105036 ATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGA 105095 | ||| ||| || || ||||| || || ||||| ||| || ||| || |||||| Sbjct 10504106 ACGAGGTGGCCGTCTGCAACCTGGCCTCCATCGCCCTCAACATGTACGTCACGCCAGAG- 10504048 Query 105096 CAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAA---AACTGTCACCAAAAACC 105152 ||| || || | | || || | || || || || ||| ||||||| Sbjct 10504047 --CGGACTTTCGACTTCAAGAAGCTGGCCTCCGTCACCAAGGTAATTGT---GAAAAACC 10503993 Query 105153 TAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGA 105212 | |||| | || || | || | ||||| ||| ||| | || || | | Sbjct 10503992 TCAACAAGATCATCGACATCAACTACTACCCGGTTCCTGAAGCTGAGACTTCCAACAAGC 10503933 Query 105213 GACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCC 105272 | ||| | || || || |||| || |||||||| || || | ||||| || || | Sbjct 10503932 GCCACAGGCCGATCGGGATCGGCGTCCAGGGTCTGGCCGACGCCTTCATCCTGATGCGGC 10503873 Query 105273 ACGCATTTG--ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTA 105330 || | || | | ||| |||||| || |||| | || || |||||||| || Sbjct 10503872 ACCCGTTCGAAAGTCC--CGAAGCTCAGCTGCTCAACATCCAGATCTTCGAGACCATCTA 10503815 Query 105331 TCACGCCGCTCTTGAGGCGAGTTCAGAGTT---GGCAGAGGTTGATGGTCCATATGAAAC 105387 |||||||| || ||||| || | ||| | |||||| | || || || || || Sbjct 10503814 CCACGCCGCCCTGGAGGCCAGCTGCGAGCTCGCCGCAGAGCT---CGGCCCCTACGAGAC 10503758 Query 105388 CTTTGAGGGTTCTCCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGG--GAAGGTG 105443 | ||||| || || | ||| |||||| | || || | || |||||| |||| | Sbjct 10503757 GTACGAGGGCTCGCC--CGTCAGCAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACG 10503700 Query 105444 -AGACCAAGCTTCACTACGACTGGGAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCT 105501 |||| | ||| | |||| ||||||| || |||||| ||| | | || | Sbjct 10503699 CCGACCGACCTT---TGGGACT-GGAAGCTGCTGAAGGAAAAGATCGGCAAACACGGCGT 10503644 Query 105502 TCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAA 105561 | ||||| || || |||| || ||||| || ||||||||||| || ||| |||| || Sbjct 10503643 GAGGAACAGCCTGCTGCTGGCGCCCATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAA 10503584 Query 105562 TAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGA 105621 || || | | | || | ||||| | |||||||| | || || | ||||| Sbjct 10503583 CAACGAGTCCATCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGA 10503524 Query 105622 GTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAA 105681 ||| |||||||||| || ||| | | || || | ||| || || ||| | | Sbjct 10503523 GTTCCAGATTGTCAACCCTCACCTCCTCAAGGATCTGACGGAGCGCGGCCTGTGGAACGA 10503464 Query 105682 GGATATGAAG 105691 ||| |||||| Sbjct 10503463 GGAGATGAAG 10503454 >seq7 Length=23593460 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 94827 TGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGG 94886 ||| ||||| ||||||||||||||||| ||| ||| || | ||||| |||||| |||| Sbjct 3931216 TGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCTTCTGGCTGAAGAAGAGAGG 3931275 Query 94887 TCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 || ||||| ||||| |||| ||||||||| ||| || ||||||| Sbjct 3931276 CCTGATGCCCGGTCTGACCTTCAGCAACGAGCTCATCAGCCGAGACGAGG 3931325 >seq5 Length=26266306 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 ||||| || | || ||||| || ||||| || |||||||| || || ||| ||| Sbjct 12374957 GAGCGTCTTGTGGCTTTTGCAGCAGTGGAGGGGATTTTCTTCTCAGGCTCATTCGCTGCT 12374898 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 || || ||||| |||||| |||| |||||||||||||| || ||||||||| || || Sbjct 12374897 ATCTACTGGCTGAAGAAGAGAGGCCTCATGCCAGGTCTTACCTACTCCAACGAACTCAT 12374839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260617731000