Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 295 2e-74 seq23 149 2e-30 seq3 134 4e-26 seq18 98.7 3e-15 seq24 84.2 7e-11 >seq1 Length=29966060 Score = 295 bits (326), Expect = 2e-74 Identities = 873/1332 (66%), Gaps = 23/1332 (2%) Strand=Plus/Plus Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261 || || |||||| | || || || || |||||||| | || | || ||| || Sbjct 12094096 ATTGGCATCGATCTGGGCACCACCTACTCTTGTGTCGGGGTCTTCCAGCATGGAAAAGTG 12094155 Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 ||||| || || ||||||||||| ||||| ||||| || ||||| || |||||||| Sbjct 12094156 GAAATTATCGCCAATGATCAAGGCAACAGGACAACTCCCAGCTACGTGGCCTTTACCGAC 12094215 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || ||| | | ||||| ||| |||| || || |||| ||| || || | || ||| Sbjct 12094216 ACAGAGAGGCTCATTGGGGATGCTGCCAAGAACCAAGTTGCCATGAACCCCACCAACACG 12094275 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441 | |||||||| || || || ||||| ||||| ||| |||| || ||||| Sbjct 12094276 ATCTTTGATGCCAAACGGCTCATTGGAAGAAGGTTTGATGACCTGGTGGTCCAGTCTGAC 12094335 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 | |||| | || || | || | || || ||| | || || | | |||| Sbjct 12094336 ATGAAACTCTGGCCCTTCAAGGT-GATC--AACGACAACGGAAAGCCCAAAGTCCAGGTG 12094392 Query 349502 GAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTT 349561 ||||||||||| ||| || ||| | || ||||| ||||| || ||||| | ||| Sbjct 12094393 GAATATAAAGGAGAAATTAAGACATTCTGTCCTGAAGAGATTTCCTCGATGGTCCTGGTT 12094452 Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 ||||||| ||||| || || || | | | || | | || | |||| || || || Sbjct 12094453 AAAATGAGAGAAATAGCGGAGGCCTTTCTGGGACAGAGGGTGTCGAATGCGGTCATCACA 12094512 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || ||||| || ||||||||| |||| | || ||||| |||||||| || | Sbjct 12094513 GTGCCAGCTTACTTTAATGATTCCCAAAGGCAAGCCACAAAGGATGCTGGAGTGATCTCC 12094572 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || |||||||||| | || || ||||| || || |||||||| ||||| || || ||| Sbjct 12094573 GGACTAAATGTTCTCCGCATCATAAATGAGCCGACAGCTGCAGCCATTGCCTACGGCCTT 12094632 Query 349742 GATAAA---ATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 |||||| | || | ||| ||| | || || |||||| | ||||| || ||| Sbjct 12094633 GATAAAGGCAAAAGAG---GAGAGCGCAATGTCCTCATCTTTGATCTTGGTGGAGGCACT 12094689 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 ||||| || || | || || |||| || ||||| ||||| || ||| | || ||||| Sbjct 12094690 TTTGACGTGTCCATCCTGACCATTGAGGATGGAATATTTGAGGTGAAATCCACAGCTGGG 12094749 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || ||||| || || ||||| |||||||| || || | || || ||||| | || Sbjct 12094750 GACACACACCTCGGCGGAGAGGATTTTGACAACCGAATGGTCAGCCACTTTGTGGAGGAG 12094809 Query 349919 TTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977 ||||| | |||| || | || || | | || |||||| || | | || | Sbjct 12094810 TTTAAAAG-AAAGCACAAGAAGGACATCAGCCAGAACAAGAGAGCAGTGAGGAGACTGCG 12094868 Query 349978 AACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAAT 350037 || || ||||| | || ||| | |||| || || | || || | ||||| || Sbjct 12094869 CACAGCTTGTGAGAGAGCAAAGAGGACCTTGTCCTCCAGCACTCAGGCAAGCATTGAGAT 12094928 Query 350038 TGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA 350097 ||| || || ||| |||| || || | | || || ||| | || || || || || Sbjct 12094929 TGACTCACTCTTTGAGGGCATTGACTTTTACACCTCAATCACAAGGGCACGCTTCGAGGA 12094988 Query 350098 ATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGC 350157 | || || ||||| | |||| |||| || || || || | || ||||||| Sbjct 12094989 GCTCAACTCAGACCTCTTTAGGGGAACACTGGAGCCAGTTGAGAAGGCCCTACAAGATGC 12095048 Query 350158 AAAAATGTCCAAAAATC--AGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATT 350215 || || | ||||| |||| | ||||| || |||||||||| |||||| | || Sbjct 12095049 TAAGCTG--GATAAATCCAAGATCCACGAAGTTGTCCTAGTTGGTGGCTCTACAAGAATC 12095106 Query 350216 CCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAAT 350274 || ||| | ||| || | || || || || ||||| | ||||| | ||| | || Sbjct 12095107 CCCAAAATCCAAAAGCTCCTGCAGGACTTCTTCAATGGTAGAGAACTAAACAAGAGC-AT 12095165 Query 350275 TAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAA 350334 || || |||||||| || || |||||||| || || ||||| |||| | ||| Sbjct 12095166 CAACCCTGATGAAGCGGTGGCCTATGGTGCAGCAGTCCAGGCTGCTATCCT-CATGG--G 12095222 Query 350335 TAAGAGTTCTAAAATTG---ATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGG 350391 | | | || ||| || | ||| || | || || ||||| | || | || || || Sbjct 12095223 TGACACCTCAGAAAATGTCCAAGATTTACTGCTCCTGGATGTGGCACCCTTGTCCCTGGG 12095282 Query 350392 ATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTAC 350451 | || || | |||| || ||||| |||||| |||| | || | || || Sbjct 12095283 CATTGAGACAGCCGGTGGCGTTATGACCCCTCTTATCAAGCGAAACACCACCATCCCCAC 12095342 Query 350452 AAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGT 350511 ||| || | || | || || |||| ||||||| ||||||| || ||||| || Sbjct 12095343 AAAGCAGACTCAGATCTTCTCCACATACTCAGATAACCAGCCAGGAGTCCTGATTCAGGT 12095402 Query 350512 ATTTGAAGGTGA 350523 | ||||||||| Sbjct 12095403 CTATGAAGGTGA 12095414 Score = 154 bits (170), Expect = 4e-32 Identities = 562/875 (64%), Gaps = 6/875 (1%) Strand=Plus/Minus Query 182919 ACATTTAAAATACCATTAGAGTCAACATCAAATGATACTTCAATCTGTGGAACACCTCGT 182978 || |||| || || || | ||| | |||||| | ||||| |||||||| || |||| Sbjct 12095540 ACGTTTAGGATGCCGTTGGCGTCGATATCAAAGGTAACTTCGATCTGTGGCACGCCTCTG 12095481 Query 182979 GGCATTGGTGGAATTCCAGTTAAAGTAAATTCACCTAATTTATTATTATCTTTAGTTCTT 183038 || || |||| || | | ||| | || | ||| || || || || | Sbjct 12095480 GGAGCAGGAGGAAGACCCGAGAGCTCAAACTTCCCCAGGAGATTGTTGTCCTTTGTCATG 12095421 Query 183039 GCTCTCTCGCCTTCATATACTTGAATAGTAACTGCTGGCTGATTATCACTATAAGTAGAA 183098 |||||||| |||||||| || ||||| ||| ||||||| ||||| || || || Sbjct 12095420 GCTCTCTCACCTTCATAGACCTGAATCAGGACTCCTGGCTGGTTATCTGAGTATGTGGAG 12095361 Query 183099 AAAACTTGCTTTTTATTAATAGGAATAGTTGAATTTCGCGGAACAATTACAGTCATTACT 183158 || | || | | || | || || || | |||||| | || ||||| || Sbjct 12095360 AAGATCTGAGTCTGCTTTGTGGGGATGGTGGTGTTTCGCTTGATAAGAGGGGTCATAACG 12095301 Query 183159 TCTCTGGCAGTTTCTAATCCTAATGATAATGGTGCTACATCTAGTAATAATAAATCT--G 183216 | | ||| || || | || | || || ||||| ||||| || | | ||||||| | Sbjct 12095300 CCACCGGCTGTCTCAATGCCCAGGGACAAGGGTGCCACATCCAGGAGCAGTAAATCTTGG 12095241 Query 183217 ATGTTTTATCTGATTTAATATCACTTAAAATTGCAGCTTGAACAGCTGCACCATATGCAA 183276 | |||| |||| | | | | | || ||||| || || ||||||||||| || | Sbjct 12095240 ACATTTT--CTGAGGTGTCACCCATGAGGATAGCAGCCTGGACTGCTGCACCATAGGCCA 12095183 Query 183277 CAGCTTCATCTGGGTTAATTGAACGAGATAA-TTCTTTGCCATTAAAAAATTCTGAAAGC 183335 | |||||||| ||||| || | | | | | |||| | ||||| || || || || Sbjct 12095182 CCGCTTCATCAGGGTTGAT-GCTCTTGTTTAGTTCTCTACCATTGAAGAAGTCCTGCAGG 12095124 Query 183336 ATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACTACTTCATCGATATTA 183395 | | ||| ||||| || ||||| || || ||||| |||| || ||||| | ||| || Sbjct 12095123 AGCTTTTGGATTTTGGGGATTCTTGTAGAGCCACCAACTAGGACAACTTCGTGGATCTTG 12095064 Query 183396 CTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTCCATAGTTTTTCTAAAT 183455 |||| | | | ||||| || | || ||||| || |||| ||| ||||| Sbjct 12095063 GATTTATCCAGCTTAGCATCTTGTAGGGCCTTCTCAACTGGCTCCAGTGTTCCCCTAAAG 12095004 Query 183456 AAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATGaaaaaaaGTCAATACCA 183515 | ||| | ||| || || | ||| || || | || | |||||||||| || Sbjct 12095003 AGGTCTGAGTTGAGCTCCTCGAAGCGTGCCCTTGTGATTGAGGTGTAAAAGTCAATGCCC 12094944 Query 183516 TTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATGATAATGTTCTTTTAGCT 183575 | | | | || ||||| ||||| || || || || || || || || || ||| Sbjct 12094943 TCAAAGAGTGAGTCAATCTCAATGCTTGCCTGAGTGCTGGAGGACAAGGTCCTCTTTGCT 12094884 Query 183576 CGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATCTGTAATATCTTGTTTA 183635 | ||||| ||||| | |||| | | || ||| || | | || || | || Sbjct 12094883 CTCTCACAAGCTGTGCGCAGTCTCCTCACTGCTCTCTTGTTCTGGCTGATGTCCTTCTTG 12094824 Query 183636 TGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGTATCAAAATCTTCACCA 183695 || ||||||||||| || | ||| || | | || | |||||||| || || Sbjct 12094823 TGCTTTCTTTTAAACTCCTCCACAAAGTGGCTGACCATTCGGTTGTCAAAATCCTCTCCG 12094764 Query 183696 CCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATTTAAA 183755 || | ||||| || ||||| || | ||| || ||||||||||| || ||||| | | Sbjct 12094763 CCGAGGTGTGTGTCCCCAGCTGTGGATTTCACCTCAAATATTCCATCCTCAATGGTCAGG 12094704 Query 183756 ATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 || || || ||||| || || ||||| | |||||| Sbjct 12094703 ATGGACACGTCAAAAGTGCCTCCACCAAGATCAAA 12094669 >seq23 Length=24361341 Score = 149 bits (164), Expect = 2e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || || || || ||||| || || | || || || || | || || |||||| Sbjct 2609137 AGAACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGACAGGGTGCGGCCATCT 2609078 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || ||||| ||||||||||| || | ||||| ||||||||||| |||||||||||| Sbjct 2609077 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 2609018 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || || || || || ||||| | |||| || || || || || || | ||| Sbjct 2609017 TGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATAGTC 2608958 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || ||||| || ||||||||||| Sbjct 2608957 TTCCCAGTGAGGGTTTTCACGAAAATCTGCAT 2608926 >seq3 Length=27041879 Score = 134 bits (148), Expect = 4e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 |||||||| || || || || ||||| || || || || || || | || || |||||| Sbjct 11044855 AGAACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 11044914 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| ||||| || || || ||||||||| Sbjct 11044915 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCC 11044974 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || ||||| || || || || ||||| | || ||||| || || || || | |||| Sbjct 11044975 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATTGTC 11045034 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || ||||| || |||||||| Sbjct 11045035 TTGCCAGTGAGGGTCTTTACGAAGATCTGCAT 11045066 Score = 132 bits (146), Expect = 1e-25 Identities = 357/538 (66%), Gaps = 6/538 (1%) Strand=Plus/Minus Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || |||||| | |||||||| ||||||||||| || | | || | || || || Sbjct 26831815 CTCATCTTTGATCTCGGTGGTGGCACTTTTGATGTTTCCATCTTGACCATCGAGGATGGT 26831756 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || |||||||| ||| | |||||||| ||||| ||||||||||| ||||| ||||| || Sbjct 26831755 ATCTTTGAAGTGAAATCCACTGCTGGAGATACTCATCTTGGTGGGGAAGACTTTGACAAC 26831696 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAATTGATATTGGAGA 349950 ||| | ||| || || || || || || || |||| || | || || | || Sbjct 26831695 CGTATGGTTAACCACTTCATTGCTGAGTTCAAACG-CAAGTACAAGAAGGACATCAGCGA 26831637 Query 349951 TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATC 350010 || || ||| | || || || | ||||| ||||| || || ||||| || | || Sbjct 26831636 CAACAAGAGGGCAGTCCGCCGTCTGCGTACTGCTTGTGAGCGGGCAAAGCGCACCCTGTC 26831577 Query 350011 ATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTC 350070 || | ||||| || ||||| || || ||||| ||| || || |||| | Sbjct 26831576 TTCCAGCACCCAGGCCAGCATTGAGATCGACTCTCTGTATGAGGGAGTTGACTTCTACAC 26831517 Query 350071 ATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGA 350130 ||||| || | ||||| ||||| || | | ||||| || | | ||| | || Sbjct 26831516 CTCTATCACCAGAGCTCGTTTTGAGGAGCTCAATGCTGATCTCTTCCGTGGAACCCTTGA 26831457 Query 350131 TCCTGTGGAAAAAGTAT-TAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAG 350189 || |||| | |||| | | ||||| || ||| ||| ||||| |||| | | Sbjct 26831456 CCCCGTGG-AGAAGTCTCTCCGTGATGCCAAGATGGATAAAGGCCAGATCCATGACATTG 26831398 Query 350190 TTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTA 350249 | || || || || ||||| ||||| || || | || || | || || || || | Sbjct 26831397 TCTTGGTAGGCGGCTCTACCCGTATCCCCAAGATCCAGAAGCTGCTTCAGGATTTCTTCA 26831338 Query 350250 ATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTG 350306 | || ||||| | | ||| | || || |||||||||||||| || || || |||| Sbjct 26831337 ACGGAAAAGAGCTAAACAAGAGC-ATCAACCCAGATGAAGCTGTGGCTTACGGAGCTG 26831281 >seq18 Length=29603586 Score = 98.7 bits (108), Expect = 3e-15 Identities = 113/151 (75%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| ||||| || || || || || || ||||| |||||||| || || ||||||| Sbjct 16851785 ATGCAGTTATCACAGTTCCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACCAAAGATG 16851726 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | ||| | || | ||||| || | || || ||||||||||| || ||||| | Sbjct 16851725 CTGGTACCATCTCTGGCCTCAATGTGCTTCGCATTATCAATGAACCCACAGCCGCAGCCA 16851666 Query 349728 TTGCATATGGGCTTGATAAAATGAGTGACCA 349758 |||||||||| | || |||| | ||||||| Sbjct 16851665 TTGCATATGGCTTGGACAAAAAG-GTGACCA 16851636 >seq24 Length=30408201 Score = 84.2 bits (92), Expect = 7e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||| || || || || || || | ||| || |||||||| || |||||||||||||||| Sbjct 22787809 CTTTCTGGATGTTGTAGTCTGACAGTGTGCGTCCATCTTCGAGCTGTTTTCCAGCAAAGA 22787868 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | ||||| |||||||| || ||||| ||| Sbjct 22787869 TCAGACGCTGCTGATCTGGGGGAATACCT 22787897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253914645075