Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq10 419 3e-112 seq5 95.1 1e-14 seq7 93.3 5e-14 seq3 93.3 5e-14 >seq10 Length=32721116 Score = 419 bits (464), Expect = 3e-112 Identities = 998/1490 (67%), Gaps = 49/1490 (3%) Strand=Plus/Plus Query 78475 AGATCCCGGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGG 78534 |||||| || ||||| |||| | || |||||| |||| ||| || ||| | Sbjct 10503488 AGATCCTTGAGGAGGTGAGGGTTGACAATCTGGAACTCTCCGGACAGCACCCTGCGGGTG 10503547 Query 78535 TAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAG 78594 ||||||||| | ||||||| ||||| | ||||||||| |||| |||||||||||| ||| Sbjct 10503548 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 10503607 Query 78595 GCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACC 78654 || || |||||||| || | ||| || |||| | || || | ||||| || Sbjct 10503608 GCCGTGGGCATGGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCC 10503667 Query 78655 TTTAG------GCCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGG 78708 || || | |||||||| || ||| || || |||||||||| || ||| Sbjct 10503668 TTCAGCAGCTTCCAGTCCCAAAGGTCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGG 10503727 Query 78709 ATACCCT--CGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGA 78766 || |||| | |||| ||||| |||| | |||||||||| | || ||| ||||| Sbjct 10503728 ATGCCCTTGCTGACG--GGCGAGCCCTCGTACGTCTCGTAGGGGCCGAGCTCTGCGGCGA 10503785 Query 78767 GTTCGCA---TGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGA 78823 | ||||| | ||| |||||| |||||||| | | ||||||||| |||||| Sbjct 10503786 GCTCGCAGCTGGCCTC---CAGGGCGGCGTGGTAGATGGTCTCGAAGATCTGGATGTTGA 10503842 Query 78824 GCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGC 78883 || | || | || ||||||| | | | || |||||| | |||||||| | Sbjct 10503843 GCAGCTGAGCTTCGGGACTTTCGAACGGGTGCCGCATCAGGATGAAGGCGTCGGCCAGAC 10503902 Query 78884 CCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTG---CTCTTTCGGGCCGCCTCGG 78940 ||||||||||||| ||||||| | ||||||| ||||| ||| | || || | Sbjct 10503903 CCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTGGAAGTCT------CAGCTTCAG 10503956 Query 78941 ---TCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCA 78997 |||||| |||| ||||||| ||| ||||| | | ||| || | Sbjct 10503957 GAACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTTTTTCACAATTACCTTGGTGA 10504016 Query 78998 CCTCGTACAATTTGGCGAAATCAAAA---TGATTTCCTTTGATGAAAGTCGGTAGGCACA 79054 | | || || ||| || ||| | | | ||| | | | ||| | Sbjct 10504017 CGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTGACGTACATGTTGAGGGCGA 10504076 Query 79055 GCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGC 79114 || ||||||||||| |||||| ||||||| ||| | ||| | | || |||| Sbjct 10504077 TGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGTACTCCACCACCTCCGTGC 10504136 Query 79115 ACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGT 79174 | | || ||||||||||||| | ||||| ||||||||||||| ||| || |||| Sbjct 10504137 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGT 10504196 Query 79175 CCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGA 79234 |||||||| |||||| || |||||||| || ||| || || | | ||| ||||| Sbjct 10504197 CCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTGGGACTCGATGATGGCGTACCAGA 10504256 Query 79235 TGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGC--GACGTACGTCCGGTACAA 79292 | | | ||| || ||| |||| || |||| | | | || | ||| | Sbjct 10504257 GCTGCTGCGCCTTCACCACCCTCTT-CACTCTCCCT-TCCTTCTCATATTTGGTGTAGAG 10504314 Query 79293 CTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAG 79352 || | ||| |||| || || ||| ||| || || |||||| || ||||||| Sbjct 10504315 CTTCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAGGACACTCGCTGGGACACATCAA 10504374 Query 79353 GTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGT 79412 | |||||||| || |||| || ||| |||||| ||||| |||||||||| ||| Sbjct 10504375 GGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACAAGGCGTA 10504434 Query 79413 GAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTC 79472 ||| ||||| | | | | |||||| | || |||| |||||| || ||||| Sbjct 10504435 GAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTC 10504494 Query 79473 CATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCC 79532 | | |||| |||||| |||||||| || |||||||| | || | |||| ||| Sbjct 10504495 GAACACGTCGAAGTGCCATGGCTCCAGGTACATGGCGAAGGCCCCGGGTCTCTTGTTGCC 10504554 Query 79533 GCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTC 79592 |||||||| ||||||||| || ||||||||| |||||| ||||| ||||| | |||| Sbjct 10504555 GCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAACTCTCAGCATCGGCACCAACCCGTT 10504614 Query 79593 GGCGACGCCGTTCGTCCCGTTGAT-TCGTGTACCGCTCGCCCGAATGTTCGAGCAGTG-G 79650 || | |||||| || || ||| | | | ||| ||| || ||| | || | Sbjct 10504615 GGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCCG-TCGATCGGATG-CAGCTCACCGCC 10504672 Query 79651 ATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATG 79710 | || || || || | ||||||| ||| |||| |||| ||| || || ||||||||| Sbjct 10504673 ACGCCTATCCCGCCAGCGGACTTGGAAATGAGCGCACACTGCTTCAGGGTGTCGTAGATG 10504732 Query 79711 CCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTC 79770 || ||||| |||||||||||| |||| ||||||||| || |||| ||| || ||| Sbjct 10504733 CCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAACTGGACAGCTGCGGCCGGTTG 10504792 Query 79771 GTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCG 79830 || |||||||||||||||||||| | ||||| ||||| |||| | || || | | Sbjct 10504793 GTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGAACCACTTCTCCGACAGGAGGTTG 10504852 Query 79831 TACGTCTCCTTGACGCGCGG----GAGGTCGTCG-CCGTGGATGCCGACCGCGACGCGCA 79885 || ||||| |||| |||| || ||| ||| ||||| || || |||| || | || Sbjct 10504853 TAGGTCTC---GACG-GCGGCGTCGATGTC-TCGCCCGTGAATCCCAACCGACACCCTCA 10504907 Query 79886 TGAAGAGGTACTGGGGCGTCTCGCCGACATTCAGGTAGCCCTTCTGCAGG 79935 ||| | || ||| || |||| | || ||| || | |||| ||||| Sbjct 10504908 TGAGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGATCTTCAGCAGG 10504957 Score = 351 bits (388), Expect = 1e-91 Identities = 874/1321 (66%), Gaps = 21/1321 (2%) Strand=Plus/Minus Query 19165 CGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224 |||||| ||| |||| || |||||| ||||| ||||| | |||||||| ||||| Sbjct 10504861 CGAGACCTACAACCTCCTGTCGGAGAAGTGGTTCACCCACGCCTCTCCGACCCTCTTCAA 10504802 Query 19225 CGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAG 19284 |||||| || ||| |||||| |||| || || ||||| | || |||||||| ||||| Sbjct 10504801 CGCCGGGACCAACCGGCCGCAGCTGTCCAGTTGCTTCCTGCTCGCCATGAAGGACGACAG 10504742 Query 19285 CATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGG 19344 ||| || ||||||||||| || || ||| |||| |||| ||| ||||||| | || || Sbjct 10504741 CATCGAAGGCATCTACGACACCCTGAAGCAGTGTGCGCTCATTTCCAAGTCCGCTGGCGG 10504682 Query 19345 TATCGGGATC-CACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACG 19403 || || | | || | ||||| |||| || | ||| || || |||| Sbjct 10504681 GATAGGCGTGGCGGTGAGCTGC-ATCCGATCGACGGGAAGCTACATCGCAGGCACCAACG 10504623 Query 19404 GAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCA 19463 | || |||| | || || ||||| | || | ||||||||| || |||||||| Sbjct 10504622 GCAACTCCAACGGGTTGGTGCCGATGCTGAGAGTTTACAACAACACCGCTCGGTACGTCG 10504563 Query 19464 ACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGG 19523 ||||||| ||| ||| | || | |||||||| ||||| |||||||||||| | Sbjct 10504562 ACCAGGGCGGCAACAAGAGACCCGGGGCCTTCGCCATGTACCTGGAGCCATGGCACTTCG 10504503 Query 19524 ACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCG 19583 |||| | || ||||| || ||| |||| || | |||||| | | | | Sbjct 10504502 ACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAGAG 10504443 Query 19584 ACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAG 19643 |||| ||| ||||||||||| || ||||| |||||| ||| || |||| || | | Sbjct 10504442 ACCTTTTCTACGCCTTGTGGATCCCTGACCTGTTCATGAAGAGAGTGGAGAGCAACCAGG 10504383 Query 19644 AATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGT 19703 | ||| | ||||||| || ||| || ||||| || ||| || || |||| || Sbjct 10504382 ACTGGTCCTTGATGTGTCCCAGCGAGTGTCCTGGGCTGGACGAGTGCTGGGGAGAGGAGT 10504323 Query 19704 TCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCC 19763 || | || | ||| | || | | || | | |||| |||||| ||| | Sbjct 10504322 TCGAGAAGCTCTACACCAAATATGAGAAGGAAGGGAGAGTGAAGAGGGTGGTGAAGGCGC 10504263 Query 19764 GGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCT 19823 | | ||||| || | || || | |||| ||| ||||| || || |||||| || Sbjct 10504262 AGCAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAAACCGGGACCCCCTACATGCTCT 10504203 Query 19824 ACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCA 19883 |||||||||| ||| ||| || ||| ||||| | ||| | ||||||| || Sbjct 10504202 ACAAGGACGCTTGCAACCGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGCAGCA 10504143 Query 19884 ACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGG 19943 |||| || || || | ||||| ||| ||||||| ||||| || || |||| Sbjct 10504142 ACCTCTGCACGGAGGTGGTGGAGTACACCAGCAAGGACGAGGTGGCCGTCTGCAACCTGG 10504083 Query 19944 CGTCCCTGTGCCTGCCGACTTTCGTCAAG-----GCCTCCTCCTTCGACTTTGCCAAATT 19998 | ||| | ||| | | ||||| | || || |||||||| || | Sbjct 10504082 CCTCCATCGCCCTCAACATGTACGTCACGCCAGAGCGGACT--TTCGACTTCAAGAAGCT 10504025 Query 19999 GTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTA 20058 | | || ||| ||| | | || || || ||||||| |||| || Sbjct 10504024 GGCCTCCGTCACCAAGGTAATTGTGAAAAACCTCAACAAGATCATCGACATCAACTACTA 10503965 Query 20059 CCCGA---CCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGT 20115 |||| | || || | | | || || | ||||||| ||||||||| ||||||||| Sbjct 10503964 CCCGGTTCCTGAAGCTGAG---ACTTCCAACAAGCGCCACAGGCCGATCGGGATCGGCGT 10503908 Query 20116 CCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCG 20175 |||||| |||||||||| ||||| || | | | | | ||||| |||| | || | Sbjct 10503907 CCAGGGTCTGGCCGACGCCTTCATCCTGATGCGGCACCCGTTCGAAAGTCCCGAAGCTCA 10503848 Query 20176 CGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGA 20235 |||||||| ||||||||| || | |||||||| ||||| || ||||| Sbjct 10503847 GCTGCTCAACATCCAGATCTTCGAGACCATCTACCACGCCGCCCTGGAGGCCAGCTGCGA 10503788 Query 20236 ACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTAT 20295 |||||| |||| |||||| |||||||||| | |||| ||||||| | |||| || Sbjct 10503787 GCTCGCCGCAGAGCTCGGCCCCTACGAGACGTACGAGGGCTCGCCCGTCAGCAAGGGCAT 10503728 Query 20296 CCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTGGAGC-----GC-CCTCAA 20349 ||||||| |||||||||| || || || ||||| | || || || Sbjct 10503727 CCTCCAGTACGACATGTGGGAGAAGACGCCGACCGACCTTTGGGACTGGAAGCTGCTGAA 10503668 Query 20350 GGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGC 20409 || ||||| | ||||| | | ||| |||| | ||||||||||| || || Sbjct 10503667 GGAAAAGATCGGCAAACACGGCGTGAGGAACAGCCTGCTGCTGGCGCCCATGCCCACGGC 10503608 Query 20410 CTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTA 20469 ||| |||||||||||| |||| ||||||||| | ||||| ||||||| | ||||||||| Sbjct 10503607 CTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCGTACACCAGCAACATCTA 10503548 Query 20470 C 20470 | Sbjct 10503547 C 10503547 >seq5 Length=26266306 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 ||||| | ||||||||| ||||| || || |||||||| ||||| ||| |||||| Sbjct 12374954 CGTCTTGTGGCTTTTGCAGCAGTGGAGGGGATTTTCTTCTCAGGCTCATTCGCTGCTATC 12374895 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 | |||||| || ||| | ||||||||||| || || | | ||||||||| || ||| | Sbjct 12374894 TACTGGCTGAAGAAGAGAGGCCTCATGCCAGGTCTTACCTACTCCAACGAACTCATTAGC 12374835 Query 60102 CGGGACGAGG 60111 |||| |||| Sbjct 12374834 AGGGATGAGG 12374825 >seq7 Length=23593460 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||| ||||||||||||||||| |||||| || || |||||||| || ||| | ||| Sbjct 3931217 GTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCCGCCATCTTCTGGCTGAAGAAGAGAGGC 3931276 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 || ||||| || |||| ||| ||||||||| || ||| ||||||| Sbjct 3931277 CTGATGCCCGGTCTGACCTTCAGCAACGAGCTCATCAGCCGAGACGAGG 3931325 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60345 AACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAG 60404 ||||| ||||||| ||||||| ||| || |||| |||||||||||||||||||||||| Sbjct 3932082 AACCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAG 3932141 Query 60405 CGGGTCGGGGATTA 60418 ||||||||||| || Sbjct 3932142 CGGGTCGGGGAGTA 3932155 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60345 AACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAG 60404 ||||| ||||||| ||||||| ||| || |||| |||||||||||||||||||||||| Sbjct 3939143 AACCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAG 3939084 Query 60405 CGGGTCGGGGATTA 60418 ||||||||||| || Sbjct 3939083 CGGGTCGGGGAGTA 3939070 >seq3 Length=27041879 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 || |||||||| | ||| |||||||||||||| | || | ||||||| ||||| | Sbjct 15255871 ATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTCCTG 15255930 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || ||||||||||||||| |||||||||||| || ||||| Sbjct 15255931 TTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTC 15255971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524628586000