Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq10 210 2e-49 seq2 89.7 6e-13 seq7 87.8 2e-12 >seq10 Length=32721116 Score = 210 bits (232), Expect = 2e-49 Identities = 473/700 (68%), Gaps = 8/700 (1%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| | || ||||| |||||||| || || || | || ||| || Sbjct 10504836 AAGTGGTTCACCCACGCCTCTCCGACCCTCTTCAACGCCGGGACCAACCGGCCGCAGCTG 10504777 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || || ||||||||| | || |||||||| ||| ||||| ||||||||||| || || Sbjct 10504776 TCCAGTTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTG 10504717 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT-CCACTGCTCGAACGT 53445 ||| ||||||| | ||| ||||||| | || || || || | | || | | | Sbjct 10504716 AAGCAGTGTGCGCTCATTTCCAAGTCCGCTGGCGGGATAGGCGTGGCGGTGAGC-TGCAT 10504658 Query 53446 CCGTGCGAACGGCACACCA-ATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTA 53504 ||| || |||| | | | ||| || || |||||| | || | || | ||||| | Sbjct 10504657 CCGATCG-ACGGGAAGCTACATCGCAGGCACCAACGGCAACTCCAACGGGTTGGTGCCGA 10504599 Query 53505 TGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGG 53564 |||| | || | ||||||||| || ||||||||| ||||||| || ||| | | Sbjct 10504598 TGCTGAGAGTTTACAACAACACCGCTCGGTACGTCGACCAGGGCGGCAACAAGAGACCCG 10504539 Query 53565 GGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGC 53624 || | |||||||| ||||| ||||| |||||| |||| | | || || || |||||| Sbjct 10504538 GGGCCTTCGCCATGTACCTGGAGCCATGGCACTTCGACGTGTTCGACTTCCTGGAGCTGA 10504479 Query 53625 GTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATT 53683 ||| || | || ||| | | | | ||||| || ||| || ||||||| Sbjct 10504478 AGAAGAACACAGGAAAGGAGGAGCAGAGAGCCAGAGACCTTTTCTAC-GCCTTGTGGATC 10504420 Query 53684 CCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAAC 53743 || ||||| |||||| | | ||||||| || |||| |||| | ||||||| || | | Sbjct 10504419 CCTGACCTGTTCATGAAGAGAGTGGAGAGCAACCAGGACTGGTCCTTGATGTGTCCCAGC 10504360 Query 53744 GAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTA 53802 ||||| || || || | | ||| || || |||||||| | || | || | || Sbjct 10504359 GAGTGTCCTGGGCTGGACGAGTG-CTGGGGAGAGGAGTTCGAGAAGCTCTACACCAAATA 10504301 Query 53803 CGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCT 53862 | | || | |||| | ||| ||||||| || | ||| | || ||| | Sbjct 10504300 TGAGAAGGAAGGGAGAGTGAAGAGGGTGGTGAAGGCGCAGCAGCTCTGGTACGCCATCAT 10504241 Query 53863 CAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAA 53922 | || |||| || || || || || |||||| ||||||||| | |||| ||| Sbjct 10504240 CGAGTCCCAGACCGAAACCGGGACCCCCTACATGCTCTACAAGGACGCTTGCAACCGGAA 10504181 Query 53923 GAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 |||||||||| ||||| | ||| |||||| | |||||| Sbjct 10504180 GAGCAACCAGCAGAACCTGGGCACCATCAAGTGCAGCAAC 10504141 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| ||||||| ||||| || || || || || |||||| |||||||||||||| | Sbjct 10503634 CCTGCTGCTGGCGCCCATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTC 10503575 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 ||||| ||||||| | |||||||||| ||| || || | || ||||| || Sbjct 10503574 CATCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTGCTGTCCGGAGAGTTCCAGAT 10503515 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAGATCAA 55671 ||||| |||||| ||||||| ||| | || | | ||||||| | |||| || Sbjct 10503514 TGTCAACCCTCACCTCCTCAAGGATCTGACGGAGCGCGGCCTGTGGAACGAGGAGATGAA 10503455 Query 55672 GA 55673 || Sbjct 10503454 GA 10503453 >seq2 Length=25629008 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | |||||||| || ||||| |||||||||||| Sbjct 3541910 GTGAAGATGTATCGAGGGCTGGCTGAGTCCTTGCCGCCGTGCAGCCTGGTTCCAAACTGT 3541969 Query 152089 -CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| || ||||| | ||||||| ||||| || ||||| || ||| || Sbjct 3541970 CCCAGA-GGCTGCAGCAGGTTCATGTTGTTGCTTCCCACAAAGTTCTGGGCTAAACCGAC 3542028 Query 152148 AATCGT 152153 ||||| Sbjct 3542029 GATCGT 3542034 >seq7 Length=23593460 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||||||| ||||| |||||||||||||| |||| || ||||||||||| Sbjct 3932155 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGAGAAATGTTCTCCATG 3932096 Query 74523 CAGTCGAAAGGGTTCT 74538 ||||||| ||||||| Sbjct 3932095 AAGTCGAACGGGTTCT 3932080 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||||||| ||||| |||||||||||||| |||| || ||||||||||| Sbjct 3939070 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGAGAAATGTTCTCCATG 3939129 Query 74523 CAGTCGAAAGGGTTCT 74538 ||||||| ||||||| Sbjct 3939130 AAGTCGAACGGGTTCT 3939145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215828995000