Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq10 251 8e-62 seq3 104 3e-17 >seq10 Length=32721116 Score = 251 bits (278), Expect = 8e-62 Identities = 753/1141 (66%), Gaps = 42/1141 (4%) Strand=Plus/Plus Query 80540 CCCACATGTCGTGCTGCAAGATGCCCT--CCGACGCCGGAGACCCCGCGAACGTCTCGTA 80597 |||||||||||| ||| | |||||||| | |||| || || ||| || |||||||||| Sbjct 10503708 CCCACATGTCGTACTGGAGGATGCCCTTGCTGACG--GGCGAGCCCTCGTACGTCTCGTA 10503765 Query 80598 CGGGCCCTCCGTCTT-GGCCAGCTCACAC---GACTCCATAAGGGCCGCGTGATAAATGC 80653 ||||| | ||| ||| ||||| || | ||||| |||| ||||| || ||| Sbjct 10503766 GGGGCCGAGC-TCTGCGGCGAGCTCGCAGCTGGCCTCCA---GGGCGGCGTGGTAGATGG 10503821 Query 80654 ACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGT-CGAACGACAAGCCCATC 80712 ||| |||| |||| | | || || ||| | | |||||| | |||| Sbjct 10503822 TCTCGAAGATCTGGATGTTGAG-CAGCTGAGCTTCGGGACTTTCGAACGGGTGCCGCATC 10503880 Query 80713 ATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTC 80772 | ||||| |||| ||||| ||||| |||||||| ||||||| | |||||||||||| Sbjct 10503881 AGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTGTGGCGCTTGTTG 10503940 Query 80773 GATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGT 80832 || ||| || || |||| ||||| |||| | ||||||| ||| ||||| | Sbjct 10503941 GAAGTCTCAGCTTCAGGAACCGGGTAGTAGTTGATGTCGATGATCTTGTTGAGGTT---T 10503997 Query 80833 GTAACAAC--CCGTG-TAACATCATGAAGTTTCTGAAAGTCGAA--TTGGTTCCC-CTTC 80886 | |||| || || | || || |||| |||||||| | | || | | Sbjct 10503998 TTCACAATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGCTCTGGCGTG 10504057 Query 80887 AC--AAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCA--GCATC 80942 || | ||| | ||| | ||| ||||| ||||| ||||||||||| || || Sbjct 10504058 ACGTACATGTTG--AGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGG 10504115 Query 80943 TGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002 |||| ||| || | |||||||| | || |||| || || |||||||| | ||| Sbjct 10504116 TGTA--CTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTG 10504173 Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 ||| ||| ||||||||||||||||||| |||||| ||||| ||||| ||| ||| Sbjct 10504174 GTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCGGTCTG 10504233 Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTC 81122 |||| || |||||||| ||| | || ||||||| |||||| | | | | ||||| Sbjct 10504234 GGACTCGATGATGGCGTACCAGAGCTGCTGCGCCTTCACCACCCTCTTCACTCTCCCTTC 10504293 Query 81123 GGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTG 81181 | |||| |||| ||| |||||| ||||||| | || || || | | Sbjct 10504294 CTTCTCATATTTGGTGTAGAGCTTC-TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCAG 10504352 Query 81182 GGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAG 81241 | |||||| | || ||||||| | |||||| || | |||| || ||||||||| Sbjct 10504353 GACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCATGAACA 10504412 Query 81242 CGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGT 81301 |||||||||||| | |||| ||| ||||| | | | | |||||| | || || Sbjct 10504413 GGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTGT 10504472 Query 81302 TGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGA 81361 | || ||| || ||||| | | ||| |||||||||||||| |||| ||||| Sbjct 10504473 TCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCATGGCTCCAGGTACATGGCGA 10504532 Query 81362 TCGACCC------CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATA 81415 | ||| |||| ||| ||||||| |||||| || || || ||| | | Sbjct 10504533 AGGCCCCGGGTCTCTTG---TTGCCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTAAA 10504589 Query 81416 CACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCT 81475 | | || ||| || | | || | || | ||||| || || |||| ||| Sbjct 10504590 CTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCCCG 10504649 Query 81476 TGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCAC 81535 | | || | ||| | | | || || || || | |||| ||||| | |||| Sbjct 10504650 TCGATCGGATGCAGCTCACCGCCACGCCTATCCCGCCAGCGGACTTGGAAATGAGCGCAC 10504709 Query 81536 ACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAAC 81595 || | |||| ||| || || || || |||||||| || | |||||| | |||| ||| | Sbjct 10504710 ACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGC 10504769 Query 81596 AGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGA 81655 | || |||| ||| || | || | ||||| ||||| || || || | ||||| ||| Sbjct 10504770 AACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGTGA 10504829 Query 81656 A 81656 | Sbjct 10504830 A 10504830 >seq3 Length=27041879 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009 || || || || ||||| | ||| ||||| || || ||||| |||| |||||| | | Sbjct 15255865 TCAACAATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTC 15255924 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 || |||||| |||||||||||| ||||||||| ||||| ||||| ||| |||| | Sbjct 15255925 TTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCGACTCG 15255984 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 | |||||||| ||| | || | ||||| ||||| Sbjct 15255985 ATGATGGCGTACCAGAGCTGCTGAGCCTTCACCAC 15256019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310221778000