Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq14 129 5e-25 >seq14 Length=22457735 Score = 129 bits (142), Expect = 5e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || ||||| | |||||| | ||||| |||||| ||||||| || ||||| ||| || Sbjct 14523647 GACCTCCCCATAATGGCGTTGCCCCCCTGCCACGCCCTCTGTCAGTTCTATGTCTGCAAC 14523706 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||||||||| ||||| || || || || | |||||||| | |||||||| ||| Sbjct 14523707 GGGGAGCTGTCCTGTCAGCTGTACCAGCGCTCCGCCGACATGGGTCTGGGGGTGCCTTTC 14523766 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || || || || ||||| |||||||| || || Sbjct 14523767 AACATCGCCAGCTATGCACTTCTCACCTACATGATTGCACA 14523807 Score = 129 bits (142), Expect = 5e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| ||||| || || || || || |||||||| |||||||| | ||| Sbjct 14523807 TGTGCAATCATGTAGGTGAGAAGTGCATAGCTGGCGATGTTGAAAGGCACCCCCAGACCC 14523748 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| | || || || || ||||| |||||||||||||| || ||| ||||| || Sbjct 14523747 ATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTTGCAGACATAGAACTGA 14523688 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||| ||||| | |||||| | ||||| || Sbjct 14523687 CAGAGGGCGTGGCAGGGGGGCAACGCCATTATGGGGAGGTC 14523647 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA 34381 || ||||||||||||||||| ||||||| || ||||| ||||||| | || || || Sbjct 14522801 GGAGTGAAGATCTGGGACGCCAACGGGTCCCGTGACTTCTTGGACAACCTAGGCTTTACA 14522860 Query 34382 TCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCG 34441 |||||||||| ||| | || || || || || ||||| ||||| ||||| || || Sbjct 14522861 GAGAGGGAGGAGGGGGACCTAGGACCTGTGTATGGTTTCCAATGGAGGCACTTCGGTGCA 14522920 Query 34442 GAGTA 34446 ||||| Sbjct 14522921 GAGTA 14522925 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || || ||||| ||||| ||||| || || || || || | ||| ||||||||| Sbjct 14522925 TACTCTGCACCGAAGTGCCTCCATTGGAAACCATACACAGGTCCTAGGTCCCCCTCCTCC 14522866 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | || || || | ||||||| ||||| || ||||||| ||||||||||||||| Sbjct 14522865 CTCTCTGTAAAGCCTAGGTTGTCCAAGAAGTCACGGGACCCGTTGGCGTCCCAGATCTTC 14522806 Query 7019 ACCCC 7023 || || Sbjct 14522805 ACTCC 14522801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262259918000