Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq23 158 3e-33 seq3 158 3e-33 seq16 95.1 3e-14 >seq23 Length=24361341 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||| ||| || |||| ||||| | |||||| Sbjct 2609137 AGAACCAGGTGGAGGGTGGACTCCTTCTGGACGTTGTAGTCCGACAGGGTGCGGCCATCT 2609078 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || ||||| || | || ||||||||||||| ||||| || ||| Sbjct 2609077 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 2609018 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| |||||||| || ||||| ||| | || ||||| || ||||| ||| Sbjct 2609017 TGAATCTTTGCCTTCACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATAGTC 2608958 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| || || || || | |||||| || Sbjct 2608957 TTCCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 2608923 >seq3 Length=27041879 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 11044855 AGAACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 11044914 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| || | || || || ||| Sbjct 11044915 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCC 11044974 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || ||||| || |||||||| | ||| ||||| || ||||| ||| Sbjct 11044975 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATTGTC 11045034 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| |||||||| || | |||||| Sbjct 11045035 TTGCCAGTGAGGGTCTTTACGAAGATCTGCAT 11045066 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 |||||||| |||||||| || |||||||| || || | ||||| | |||||||||||| Sbjct 11046872 AGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGC 11046931 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 ||||| || || ||||| || | || |||||||| || | || ||||| ||||||||| Sbjct 11046932 TGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTATCCTGGATC 11046991 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || || ||||| || ||||| ||| | || ||||| || ||||| || || || Sbjct 11046992 TTGGCCTTAACGTTCTCAATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTTTTGCCG 11047051 Query 211089 GTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || ||||| | |||||| || Sbjct 11047052 GTGAGGGTTTTCACAAAGATCTGCATCTT 11047080 >seq16 Length=30170098 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || |||||||| || |||||||||||||||| | || ||| ||||||||| || ||| Sbjct 16275013 GGCAGAGGAGGGCAGTCTGCTCTGCGTTTTGCTCGTCTAAGAATGGAAAAGAGACATAAC 16275072 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAG-TGTTT-TATC-AAAGACAACAAGTGT 139938 ||| |||| |||||||| |||| || | ||| | ||| | || || |||| |||| | Sbjct 16275073 TACGTGAGGAAAGTTGCTGAGACTGCTGTCCAGCTCTTTGTGTCTAACGACA--AAGT-T 16275129 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 ||| | || || || ||||| || || ||||| || ||||| | || | ||| Sbjct 16275130 AATGTGGCAGGAATGGTCTTGGCTGGCTCTGCAGATTTTAAGACTGAACTAAGCCAGTCT 16275189 Query 139999 GACTTTTTTGACCC 140012 ||| | |||||||| Sbjct 16275190 GACATGTTTGACCC 16275203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151628709125