Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq23 100 2e-16 seq3 86.0 4e-12 >seq23 Length=24361341 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| ||||||||||| || || || ||||| || || || || || Sbjct 2608923 AAGATGCAGATTTTCGTGAAAACCCTCACTGGGAAGACTATCACCCTGGAGGTGGAGCCC 2608982 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || |||| | | || ||| ||| || |||||||| | || || || Sbjct 2608983 AGTGATACCATTGAGAACGTGAAGGCAAAGATTCAGGATAAAGAAGGCATTCCTCCTGAC 2609042 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| |||||||| |||||||| | ||||| | || ||| Sbjct 2609043 CAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTGTCGGACTAC 2609102 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||| | || || |||||||| Sbjct 2609103 AACGTCCAGAAGGAGTCCAC 2609122 >seq3 Length=27041879 Score = 86.0 bits (94), Expect = 4e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || ||||||||||| || ||||| ||||| || || || || || Sbjct 11047080 AAGATGCAGATCTTTGTGAAAACCCTCACCGGCAAAACCATCACCCTGGAGGTGGAGCCC 11047021 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || |||| || |||| | || || || || || || | || || || Sbjct 11047020 AGTGATACCATTGAGAACGTTAAGGC-CAAGATCCAGGATAAGGAGGGCATCCCCCCTGA 11046962 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || |||||||| || || |||||||| | ||||| | ||| || Sbjct 11046961 CCAGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTA 11046902 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 11046901 CAACATCCAGAAGGAGTCCAC 11046881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009497012700