Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3 131 4e-25 seq25 95.1 3e-14 >seq3 Length=27041879 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||| ||||||||||| |||| ||||| |||| || || | |||||| Sbjct 11044855 AGAACAAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 11044914 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || | || ||||| || || || || || || || Sbjct 11044915 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTATCC 11044974 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| || || |||||||| || |||||| || | ||||| ||| Sbjct 11044975 TGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGTTCCACCTCCAGGGTGATTGTC 11045034 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || |||| ||| | ||||| Sbjct 11045035 TTGCCAGTGAGGGTCTTTACGAAGATCTGCAT 11045066 >seq25 Length=55650406 Score = 95.1 bits (104), Expect = 3e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| | ||||| || || | || || ||||||||||| || ||||| ||| | ||||| Sbjct 45635984 CCAAATCTACAATGTGATCGTCACAGCTCATGCCTTTGTAATAATTTTTTTTATAGTTAT 45635925 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || ||||| || || || ||| | | || |||| ||||| || ||||| Sbjct 45635924 ACCAATTATAATTGGCGGCTTTGGTAACTGACTAATCCCACTAATAATTGGCGCCCCTGA 45635865 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || || ||||| || | || || || || |||||| | || || || || || |||| Sbjct 45635864 CATAGCCTTTCCCCGGATGAATAACATGAGCTTTTGACTCCTTCCCCCCTCATTTCTTCT 45635805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530818017350