Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq14 123 2e-23 seq4 91.5 1e-13 >seq14 Length=22457735 Score = 123 bits (136), Expect = 2e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 30015 CGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA 30074 |||| |||||||| ||||| || ||||| ||||| ||||| ||||| ||||| | | Sbjct 14522915 CGAAGTGCCTCCATTGGAAACCATACACAGGTCCTAGGTCCCCCTCCTCCCTCTCTGTAA 14522856 Query 30075 AGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 30134 |||| |||||||| ||||| | ||| |||||||||||||||||||| || || |||| Sbjct 14522855 AGCCTAGGTTGTCCAAGAAGTCACGGGACCCGTTGGCGTCCCAGATCTTCACTCCTTTCT 14522796 Query 30135 CGGAGAGCTCTTTGGAGTTTGTGGACCC 30162 | || ||||| |||| ||||| || || Sbjct 14522795 CTGACAGCTCCTTGGCATTTGTTGATCC 14522768 Score = 120 bits (132), Expect = 2e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || || | ||| || |||||||| ||||| || | |||||||||||||| || ||| Sbjct 14523819 AGTCCTGTAATGTGTGCAATCATGTAGGTGAGAAGTGCATAGCTGGCGATGTTGAAAGGC 14523760 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 ||||| || |||||||| | || | |||||| ||||| || || ||||| |||| || Sbjct 14523759 ACCCCCAGACCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTTGCAG 14523700 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCAT 29874 || || |||||||| | ||| ||||| || || | ||||| Sbjct 14523699 ACATAGAACTGACAGAGGGCGTGGCAGGGGGGCAACGCCAT 14523659 >seq4 Length=33259606 Score = 91.5 bits (100), Expect = 1e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 114289 CTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGA 114348 ||||||||||||||| | ||| | |||| || |||| || || ||||| || ||||| || Sbjct 4569947 CTCCCTGCTGAGGACGATGTTGATCCTGCCTTTCAGTGGCCTGTTCTTCTCTGGGATTGA 4570006 Query 114349 GAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 |||||| ||||| || ||||| | |||||| |||| | | ||| Sbjct 4570007 GAACCAGGTCTTCCTGCCCATGACCACCACATTCTTCCTGCCT 4570049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406163076247150