Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq5 342 4e-89 seq14 154 1e-32 >seq5 Length=26266306 Score = 342 bits (378), Expect = 4e-89 Identities = 305/382 (80%), Gaps = 0/382 (0%) Strand=Plus/Plus Query 68936 AGTTCCAGAGTATCTGGCATTAGTGCGACAGAAGATGTCTGAATATAGTCACAACAGCTT 68995 ||||||||||||||||||| | ||| | ||| |||||||| |||| ||| | Sbjct 20414421 AGTTCCAGAGTATCTGGCAGTGGTGTCAAAGATTGTGTCTGAAAATAGAGGCAAAGAAAT 20414480 Query 68996 CCACCTACACAGTCCAGAGGGGTCCAAACTGACCATAGGACCCGTTGAGGACACAGAGTA 69055 | || | |||||| ||| ||||||||||| | ||||| || |||||||||||||| Sbjct 20414481 GCCTCTGCCTTATCCAGATGGGCCCAAACTGACCGTTGGACCAGTGGAGGACACAGAGTA 20414540 Query 69056 TAAAGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGAC 69115 || ||||||||||||||||| |||| |||||||||||||||| | |||| | | Sbjct 20414541 CAATGACAGGCCTGCAGTGGTCAACGCATGGGGAAAGTTTTATCTTCCCAAAACAACAAA 20414600 Query 69116 GATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGAT 69175 |||| |||| ||||| |||||| ||||||| | |||| ||||||||||||||||||| | Sbjct 20414601 GATGGAGGTTATCGGCTATGTGGAGGGAACTTCGTACCCATGTGACCAGCTTGTCCTGGT 20414660 Query 69176 GACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAA 69235 |||||| |||||||||||||||||||||| ||| ||||||||||||||| |||||||| Sbjct 20414661 GACCTGTGAGGACCAGAAGGTGTACGGCTTTGATGGAGACGAGCTGCATCTGGTGGCTTC 20414720 Query 69236 CTGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCA 69295 ||| ||| |||||||| ||| |||||| || |||||||||| ||||| ||||| || Sbjct 20414721 CTGCCTGAATCAGATGTTTACAGAGGGAATACCCGATCCTGCATTACAGAGTTATTACCA 20414780 Query 69296 TGGGGAGGCCTTCAAACATATG 69317 ||||||| | |||||| | ||| Sbjct 20414781 TGGGGAGCCTTTCAAAGACATG 20414802 Score = 116 bits (128), Expect = 3e-21 Identities = 107/134 (80%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 69317 GACCAAGGAGGACTGGGAGAAGGTGAGGCAGAGCCCTGCGGGAAAAAGGTTGGATGAGGA 69376 |||||| |||||||||| |||||||| ||| |||| | ||| || |||||||| ||||| Sbjct 20414881 GACCAAAGAGGACTGGGCGAAGGTGAAACAGGGCCCAGTGGGGAAGAGGTTGGAAGAGGA 20414940 Query 69377 GCATCATAAACTGGTGGTGTCTCAAAAATCTGCACTGCTGAGGAATCTCAGAATCAGCAG 69436 || || ||||||||||| |||| ||||| || | || |||||||| ||||| ||| Sbjct 20414941 GCGTCGTAAACTGGTGGCTTCTCGCAAATCCGCTTTCATGCAGAATCTCAAAATCATCAG 20415000 Query 69437 ACAAA-ATAGAGGT 69449 ||||| | |||||| Sbjct 20415001 ACAAAGACAGAGGT 20415014 >seq14 Length=22457735 Score = 154 bits (170), Expect = 1e-32 Identities = 135/168 (80%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||||||| |||||||||| ||||| |||||||||||||| || ||||| ||||| ||||| Sbjct 14522935 CATGTCCTTGTACTCTGCACCGAAGTGCCTCCATTGGAAACCATACACAGGTCCTAGGTC 14522876 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||||| ||||| | ||||| |||||||| ||||| | ||| ||||||||||| Sbjct 14522875 CCCCTCCTCCCTCTCTGTAAAGCCTAGGTTGTCCAAGAAGTCACGGGACCCGTTGGCGTC 14522816 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||||||||| || || ||||| || ||||| |||| ||||| || || Sbjct 14522815 CCAGATCTTCACTCCTTTCTCTGACAGCTCCTTGGCATTTGTTGATCC 14522768 Score = 120 bits (132), Expect = 2e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || || | ||| || |||||||| ||||| || | |||||||||||||| || || Sbjct 14523819 AGTCCTGTAATGTGTGCAATCATGTAGGTGAGAAGTGCATAGCTGGCGATGTTGAAAGGC 14523760 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 ||||| || |||||||| | || | |||||| |||||||| || ||||| || | || Sbjct 14523759 ACCCCCAGACCCATGTCGGCGGAGCGCTGGTACAGCTGACAGGACAGCTCCCCGTTGCAG 14523700 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 || || |||||||| | ||||||||| || || | ||||| Sbjct 14523699 ACATAGAACTGACAGAGGGCGTGGCAGGGGGGCAACGCCAT 14523659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369507087415775