Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xiphophorus_20couchianus_20[genbank_20GCA_5F001444195.1_202015-11- 17] 25 sequences; 708,396,389 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq10 398 1e-105 seq3 86.0 9e-12 >seq10 Length=32721116 Score = 398 bits (440), Expect = 1e-105 Identities = 1271/1960 (65%), Gaps = 21/1960 (1%) Strand=Plus/Plus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| || || || ||||||| | ||| || | | | | ||||| ||||| || Sbjct 10503452 TTCTTCATCTCCTCGTTCCACAGGCCGCGCTCCGTCAGATCCTTGAGGAGGTGAGGGTTG 10503511 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || || || || ||||| |||| || || || ||||| || || ||||| || | || Sbjct 10503512 ACAATCTGGAACTCTCCGGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCG 10503571 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 10503572 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATGGGCGCCAGCAGC 10503631 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | || || || | || ||| | | ||| || || || || ||||| |||||||| Sbjct 10503632 AGGCTGTTCCTCACGCCGTGTTTGCCGATCTTTTCCTTCAGCAGCTTCCAGTCCCAAAGG 10503691 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 || | || ||||| | ||||| || || || || || || | || || Sbjct 10503692 TCGGTCGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGCGAGCCC 10503751 Query 77361 TTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCT 77417 | || || || || || || |||| | || || || || || || |||| || Sbjct 10503752 TCGTACGTCTCGTAGGGGCCGAGCTCTG---CGGCGAGCTCGCAGCTGGCCTCCAGGGCG 10503808 Query 77418 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAAC 77477 ||| || || || ||||| |||| | ||||| || ||||| ||| || ||| Sbjct 10503809 GCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCTTCGGGACTTTCGAAC 10503868 Query 77478 GGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTA 77537 || | | | || || ||||| || || | ||||| || || || || || || || Sbjct 10503869 GGGTGCCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGATCCCGATCGGCCTG 10503928 Query 77538 TGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTA 77597 || | ||| |||||| | | |||||| |||| || || || || ||||| || || || Sbjct 10503929 TGGCGCTTGTTGGAAGTCTCAGCTTCAGGAACCGGGTAGTAGTTGATGTCGATGATCTTG 10503988 Query 77598 TTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCA 77657 ||||| ||| | |||| ||| || ||| || || || || || | | Sbjct 10503989 TTGAGGTTTTTCACAATTACCTTGGTGACGGAGGCCAGCTTCTTGAAGTCGAAAGTCCGC 10504048 Query 77658 TCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTA 77714 ||| | || ||||||| | || || || || || || || || || ||||| | Sbjct 10504049 TCTGGCGTGACGTACATGTTGAGGGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCC 10504108 Query 77715 GCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTT 77774 | ||| || | | | ||| || || || || || || ||||| |||||||| || Sbjct 10504109 TTGCTGGTGTACTCCACCACCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTC 10504168 Query 77775 TGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCA 77834 || ||||||||||| ||||| | |||||| || || || | || ||||||||||| Sbjct 10504169 TGCTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTAGAGCATGTAGGGGGTCCCGGTTTCG 10504228 Query 77835 ATCTGTGATTCGATAATAGATTTCCAGACGACTCTA-GCTTTTATCATAGATTTGTATCG 77893 |||| || ||||| || | | ||||| | || || || | || || || Sbjct 10504229 GTCTGGGACTCGATGATGGCGTACCAGA-GCTGCTGCGCCTTCACCACCCTCTTCACTCT 10504287 Query 77894 CCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAA 77953 || || | ||||||| || || ||| || || || |||||||| || |||| Sbjct 10504288 CCCTTCCTTCTCATATTTGGTGTAGAGCTTCTCGAACTCCTCTCCCCAGCACTCGTCCAG 10504347 Query 77954 TCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCAT 78013 ||||| || || | || |||||||| |||||||| | || |||| ||||| Sbjct 10504348 CCCAGGACACTCGCTGGGACACATCAAGGACCAGTCCTGGTTGCTCTCCACTCTCTTCAT 10504407 Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073 || || ||||| ||||| | || || || |||| || ||| || || || ||||| Sbjct 10504408 GAACAGGTCAGGGATCCACAAGGCGTAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTTCC 10504467 Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133 ||| ||||| || || || || || || | | || | |||||||| || || || || Sbjct 10504468 TGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCGAAGTGCCATGGCTCCAGGTACAT 10504527 Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193 || | | || |||| || || || ||||| || | || | |||||||| || || Sbjct 10504528 GGCGAAGGCCCCGGGTCTCTTGTTGCCGCCCTGGTCGACGTACCGAGCGGTGTTGTTGTA 10504587 Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253 |||||||| ||| || | | ||||| || | || || || || | || || ||||| Sbjct 10504588 AACTCTCAGCATCGGCACCAACCCGTTGGAGTTGCCGTTGGTGCCTGCGATGTAGCTTCC 10504647 Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313 | | || || || | | | ||||| || || || ||| || || || || Sbjct 10504648 CGTCGATCGGATGCAGCTCACCGCCACGCCTATCCCGCCAGCGGACTTGGAAATGAGCGC 10504707 Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373 || | |||| || |||||||| || || || ||||| ||| ||||| || || || Sbjct 10504708 ACACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAA 10504767 Query 78374 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGT 78433 || || |||| || | | || || || || || | |||||||| || || || Sbjct 10504768 GCAACTGGACAGCTGCGGCCGGTTGGTCCCGGCGTTGAAGAGGGTCGGAGAGGCGTGGGT 10504827 Query 78434 AAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATG 78493 ||||| || || || || || ||||| || || | || | || ||||| | || Sbjct 10504828 GAACCACTTCTCCGACAGGAGGTTGTAGGTCTCGACGGCGGCGTCGATGTCTCGCCCGTG 10504887 Query 78494 AATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTAT 78553 ||| || |||| || | ||| | ||| ||||| |||| || || || || || Sbjct 10504888 AATCCCAACCGACACCCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTCCCGTTGAT 10504947 Query 78554 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 78613 |||| || ||| || |||| ||| || || || || ||||||| ||||| ||||| Sbjct 10504948 CTTCAGCAGGTAGGAACGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAAAAATCTCT 10505007 Query 78614 CTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCAT-GACAG 78672 |||||||| || || || || || |||| || | || || || | | | | Sbjct 10505008 GTCGTAAATGATGGAGGAGTTGAGGCGGTCCTTGTTTTCCATGACGATGTCGAGCGTCTG 10505067 Query 78673 TAGTTGAAATAATAGGAGATCGTACACCATTTTT---AGGATTAACATAGTTAAATAAAT 78729 | || || || ||||| | | || || ||| || |||||| || | | Sbjct 10505068 CT-TGGAGATCATGGGAGAGTGG---CGTTTGTTCAGAGGGTTGACATAGGCGAACAGGT 10505123 Query 78730 CTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTC 78789 | ||||| || || || || | || || || ||||| || || || || || || || | Sbjct 10505124 CCTCCATCACCTCGCTGAACACCTTCTTGGTCTCCTTATGCAGGTTGGAGACGGCAATCC 10505183 Query 78790 TTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCG 78849 | || || || || || || || || |||| || || ||||| || || || |||| Sbjct 10505184 TCGCGGCCAGGATGGCGTAGTCGGGGTGTTTGGTCGTCAGGGTGGCCGCGATCTCCGCCG 10505243 Query 78850 CTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGG 78909 ||| | |||| ||| | || ||||| || | || | || || || || ||||||| Sbjct 10505244 CTAGCGTGTCTAGCTCCACGGTGGTGACGCCGCTGTACAAGCCCTGTATCACCTTCATGG 10505303 Query 78910 CGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCTA-ATACGA 78968 ||| | | ||||| ||||| || | ||||| || || || || |||| || || Sbjct 10505304 TGATCTGAGCCGGATCCACAAAGTCCGGGTTCAGGCCGTAGCA-AAGCTTCTGGATGCGG 10505362 Query 78969 GATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 || |||||||||||||| || || ||||| || |||| Sbjct 10505363 GAGGTGATTTTATCAAACATGACGCGCTCCTGGCGCCCAT 10505402 >seq3 Length=27041879 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 ||||| || || ||||| || | ||||| |||||||||||||| |||||| |||| | Sbjct 15255871 ATCTCTGTGCAGAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGGTTGGTCTTCCTG 15255930 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATA 77852 ||||| | |||||| || || || |||| || || || || |||| || ||||| || Sbjct 15255931 TTGCAGGCGTCCTTGTAGAGCATGTACGGCGTACCCGTCTCTGTCTGCGACTCGATGATG 15255990 Query 77853 GATTTCCAGA 77862 | | ||||| Sbjct 15255991 GCGTACCAGA 15256000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668582916000